SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000064547
Gene: LPAR2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:19623655-19628930 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039601772 chr19:19525251-19614878 Sample_02_0396 Skin NHEK-D 1772 21 2297 184 14 242 4046 PBX4,CILP2,YJEFN3,NDUFA13,LPAR2,TSSK6,ATP13A1,GMIP
SE_02_107800262 chr19:19569972-19607423 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 262 12 937 60 3 18 207 PBX4,YJEFN3,CILP2,LPAR2,GMIP
SE_02_037700123 chr19:19570452-19592529 Sample_02_0377 Skeletal muscle RMS238 123 7 586 35 3 9 71 PBX4,YJEFN3,CILP2,LPAR2
SE_02_068701171 chr19:19573715-19591724 Sample_02_0687 Lung NCI-H146_no infection 1171 5 494 31 2 0 0 PBX4,YJEFN3,CILP2,LPAR2
SE_01_002100804 chr19:19574800-19581040 Sample_01_0021 Skin bipolar-neuron 804 2 151 15 1 0 0 PBX4,YJEFN3,CILP2,LPAR2
SE_02_021101149 chr19:19575252-19606839 Sample_02_0211 Lung MRC-5_NFD_1DPT 1149 8 796 53 2 1 49 PBX4,YJEFN3,CILP2,LPAR2,GMIP
SE_02_104801014 chr19:19578359-19603217 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1014 15 618 37 1 1 49 PBX4,YJEFN3,CILP2,LPAR2,GMIP
SE_02_024100476 chr19:19579945-19614944 Sample_02_0241 Colon V456 476 11 854 60 4 1 49 PBX4,CILP2,LPAR2,ATP13A1,GMIP
SE_02_124800343 chr19:19581983-19606925 Sample_02_1248 Bladder RT4 343 4 639 38 0 1 49 PBX4,CILP2,LPAR2,GMIP
SE_02_139200384 chr19:19583987-19618704 Sample_02_1392 Peripheral blood Mac-2A_ALK- 384 13 814 64 3 4 150 PBX4,CILP2,GMIP,LPAR2,ZNF101,ATP13A1
SE_02_045700098 chr19:19585964-19616793 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 98 9 738 59 3 1 49 PBX4,CILP2,LPAR2,ATP13A1,GMIP
SE_02_093800633 chr19:19587858-19615703 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 633 9 653 53 3 1 49 PBX4,CILP2,LPAR2,ATP13A1,GMIP
SE_02_002300601 chr19:19588307-19615604 Sample_02_0023 Blood CD8donorC 601 9 637 53 3 1 49 PBX4,LPAR2,ATP13A1,GMIP
SE_02_023300675 chr19:19589460-19606808 Sample_02_0233 Tonsil Th1 675 7 408 28 0 1 49 PBX4,LPAR2,GMIP
SE_02_104200470 chr19:19589565-19606982 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 470 12 408 29 0 1 49 PBX4,LPAR2,GMIP
SE_00_004700336 chr19:19589678-19607569 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 336 10 412 28 0 1 49 PBX4,LPAR2,GMIP
SE_02_039800350 chr19:19589927-19618889 Sample_02_0398 Mammary gland MDA-MB-231-MCF-7 350 3 640 56 3 5 198 PBX4,ZNF101,LPAR2,ATP13A1,GMIP
SE_02_078400253 chr19:19590230-19607006 Sample_02_0784 Blood OSU-CLL 253 4 394 27 0 1 49 PBX4,LPAR2,GMIP
SE_02_149400553 chr19:19590403-19598636 Sample_02_1494 Other monocyte-derived dendritic cells_0h 553 9 177 10 0 0 0 PBX4,LPAR2,GMIP
SE_02_125400716 chr19:19590567-19616248 Sample_02_1254 Bladder Bladder tumor Basal1 716 11 575 51 3 1 49 PBX4,LPAR2,ATP13A1,GMIP
SE_02_059200398 chr19:19590794-19606812 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 398 7 373 25 0 1 49 PBX4,LPAR2,GMIP
SE_02_104000467 chr19:19590926-19606538 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 467 18 360 24 0 1 49 PBX4,LPAR2,GMIP
SE_01_010500305 chr19:19591270-19617552 Sample_01_0105 Thyroid gland thyroid gland_54y 305 10 582 53 3 1 49 PBX4,LPAR2,ATP13A1,GMIP
SE_02_104100256 chr19:19591510-19606869 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 256 11 357 25 0 1 49 PBX4,LPAR2,GMIP
SE_02_026900231 chr19:19591793-19615114 Sample_02_0269 Kidney HK-2 231 7 515 45 3 1 49 PBX4,LPAR2,ATP13A1,GMIP
SE_01_008700585 chr19:19593807-19619084 Sample_01_0087 Thyroid gland thyroid-gland 585 3 546 53 3 6 241 PBX4,ZNF101,LPAR2,ATP13A1,GMIP
SE_00_004400569 chr19:19596813-19603850 Sample_00_0044 Cord blood T-cell 569 1 148 10 0 1 49 PBX4,LPAR2,GMIP
SE_02_104800536 chr19:19630047-19659947 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 536 11 936 65 3 269 4019 GMIP,ATP13A1,ZNF101,PBX4,LPAR2
SE_02_153000885 chr19:19631203-19646754 Sample_02_1530 Peripheral blood neutrophils_0BA0X 885 3 450 31 2 128 1924 GMIP,ATP13A1,ZNF101,PBX4,LPAR2
SE_02_075100077 chr19:19645307-19671518 Sample_02_0751 Lymphoma Rec-1_WO 77 6 826 70 2 176 2653 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_075000121 chr19:19645914-19671268 Sample_02_0750 Lymphoma Rec-1_GSI 121 6 794 69 2 162 2496 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_111200386 chr19:19648154-19672948 Sample_02_1112 T lymphocyte THP-6 T-ALL 386 7 742 69 1 134 2189 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_107800220 chr19:19649118-19664693 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 220 8 500 36 0 134 1972 ATP13A1,ZNF101,GMIP,PBX4,LPAR2
SE_02_078100712 chr19:19659656-19671641 Sample_02_0781 Lymphoma Pfeiffer_DMSO 712 1 336 33 1 34 472 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_078300642 chr19:19660568-19670626 Sample_02_0783 Blood MEC2 642 2 281 31 1 26 380 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_034800420 chr19:19660684-19672091 Sample_02_0348 Peripheral blood CUTLL1_wild-type 420 2 306 33 1 26 390 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_078200618 chr19:19660787-19670442 Sample_02_0782 Blood MEC1 618 2 266 31 1 26 380 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_082601649 chr19:19660845-19683026 Sample_02_0826 Stomach gastric tumor 1649 4 574 59 2 26 748 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_034900445 chr19:19660917-19672083 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 445 3 300 33 1 26 390 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_00_003900513 chr19:19660948-19670572 Sample_00_0039 Spleen spleen_3y 513 2 267 31 1 26 380 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_003500344 chr19:19660971-19672082 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 344 3 298 33 1 26 390 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_003400261 chr19:19660988-19672075 Sample_02_0034 Peripheral blood CUTLL1_GSI 261 3 297 33 1 26 390 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_057500850 chr19:19661014-19664642 Sample_02_0575 Blood MOLM13_sgLKB1e2 850 1 103 10 0 26 238 ATP13A1,ZNF101,GMIP,PBX4,LPAR2
SE_02_021300775 chr19:19661035-19671101 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 775 1 278 31 1 26 380 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_012000449 chr19:19661047-19670331 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 449 2 258 31 1 26 380 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_021200295 chr19:19661069-19671605 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 295 1 291 32 1 26 380 ZNF101,ATP13A1,PBX4,LPAR2,GMIP
SE_02_057400713 chr19:19661111-19664772 Sample_02_0574 Blood MOLM-13_sgNeg2 713 1 100 10 0 26 238 ATP13A1,ZNF101,GMIP,PBX4,LPAR2
SE_02_058100798 chr19:19661198-19664675 Sample_02_0581 Blood MOLM13_empty_HG 798 1 96 10 0 26 238 ATP13A1,ZNF101,GMIP,PBX4,LPAR2
SE_02_115500457 chr19:19661661-19670663 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 457 2 243 30 1 26 380 ZNF101,ATP13A1,GMIP,PBX4,LPAR2
SE_02_104901237 chr19:19665370-19671165 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1237 1 163 20 1 0 142 ZNF101,GMIP,PBX4,LPAR2,ATP13A1
SE_02_104701161 chr19:19666036-19669816 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1161 1 108 15 0 0 142 ZNF101,GMIP,PBX4,LPAR2,ATP13A1
Genomic distribution of SEs associated with LPAR2
Genome Browser

The strength of the tissue affected by the gene

Expression of LPAR2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)