SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: LOC642846 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_006800245 chr12:9331264-9367779 Sample_02_0068 Skin A375_DMSO 245 15 1130 149 1 0 277 LOC642846
SE_02_035900236 chr12:9331305-9369302 Sample_02_0359 Colon Colo741 236 4 1165 155 1 0 277 LOC642846
SE_02_018300172 chr12:9331307-9373152 Sample_02_0183 Skin SKMEL2 172 7 1249 168 1 0 277 LOC642846
SE_02_018100046 chr12:9331341-9373253 Sample_02_0181 melanoma COLO679 46 7 1253 170 1 0 277 LOC642846
SE_02_040500055 chr12:9331386-9366419 Sample_02_0405 Mammary gland ZR-75-30_KO 55 6 1073 134 1 0 277 LOC642846
SE_02_018000030 chr12:9331401-9373129 Sample_02_0180 melanoma CJM 30 7 1245 166 1 0 277 LOC642846
SE_02_057100138 chr12:9331460-9366820 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 138 17 1085 140 1 0 277 LOC642846,LOC101928030,LOC101930452
SE_02_152200248 chr12:9331475-9373200 Sample_02_1522 Skin A375 RTKi 248 10 1243 166 1 0 277 LOC101930452,LOC101928030,LOC642846
SE_02_152100180 chr12:9331476-9372336 Sample_02_1521 Skin A375 DMSO 180 12 1225 159 1 0 277 LOC101930452,LOC101928030,LOC642846
SE_02_050100132 chr12:9331553-9371010 Sample_02_0501 Blood HL-60_CTRL 132 12 1201 156 1 0 277 LOC101930452,LOC642846,LOC101928030
SE_02_057200092 chr12:9331589-9372276 Sample_02_0572 Brain LN229_1_mM_glucose 92 13 1220 159 1 0 277 LOC101930452,LOC101928030,LOC642846
SE_02_042300229 chr12:9331902-9367025 Sample_02_0423 Skin A375 229 12 1074 138 1 0 277 LOC642846
SE_02_057000122 chr12:9332001-9367315 Sample_02_0570 Brain LN229_10_mM_glucose 122 15 1077 138 1 0 277 LOC642846,LOC101928030,LOC101930452
SE_02_040600170 chr12:9332462-9351169 Sample_02_0406 Mammary gland ZR-75-30_parental 170 7 563 74 1 0 277 LOC642846
SE_02_094200121 chr12:9332934-9351650 Sample_02_0942 Brain LN229 121 7 573 71 1 0 277 LOC642846,LOC101928030,LOC101930452
Genomic distribution of SEs associated with LOC642846
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC642846

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)