SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: LOC147727 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_036200567 chr19:10583446-10605374 Sample_02_0362 Haematopoietic and lymphoid tissue REH 567 4 589 73 1 25 447 AP1M2,SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,MIR1238,KRI1
SE_00_003100509 chr19:10586520-10623881 Sample_00_0031 Placenta placenta 509 4 1042 126 1 25 285 AP1M2,SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,MIR1238,KRI1,AP12,KEAP1,PDE4A,S1PR5
SE_00_002200889 chr19:10586722-10618039 Sample_00_0022 Lung lung_30y 889 5 870 109 1 25 285 AP1M2,SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,MIR1238,KRI1,AC011475.1,AP12
SE_02_010400857 chr19:10590789-10616100 Sample_02_0104 Blood neutrophils 857 6 707 91 1 17 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_02_012400407 chr19:10591134-10628592 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 407 5 1051 124 1 30 530 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_02_009500012 chr19:10592233-10629261 Sample_02_0095 Mammary gland MDA-MB-468 12 4 1032 122 0 30 530 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_02_028800047 chr19:10592617-10605747 Sample_02_0288 Tonsil CB5_H3K27Ac 47 2 352 41 0 17 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_01_008800921 chr19:10592974-10618638 Sample_01_0088 Tibial nerve tibial-nerve 921 6 720 88 0 19 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_02_032100599 chr19:10592995-10606620 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 599 2 358 40 0 17 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_00_004000337 chr19:10593312-10617976 Sample_00_0040 Spleen spleen_30y 337 10 690 86 0 18 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1,AC011475.1,AP12,DN2
SE_00_003900232 chr19:10593315-10616733 Sample_00_0039 Spleen spleen_3y 232 5 646 81 0 17 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1,AC011475.1,AP12,DN2
SE_02_016600613 chr19:10593362-10627159 Sample_02_0166 Mammary gland HCC1954_Parental 613 5 932 108 0 25 416 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_02_012000260 chr19:10593524-10605507 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 260 2 320 38 0 17 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_02_021300768 chr19:10593549-10606045 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 768 2 334 38 0 17 160 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_01_009000406 chr19:10593609-10644829 Sample_01_0090 Lung upper-lobe-of-left-lung 406 9 1480 173 3 82 1999 SLC44A2,LOC147727,ATG4D,CDKN2D,ILF3,AP1M2,MIR1238,KRI1
SE_00_002700318 chr19:10595517-10617082 Sample_00_0027 Blood natural-killer-cell 318 4 593 78 0 14 160 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_02_021600515 chr19:10599937-10635658 Sample_02_0216 Skin NHEK_scramble 515 6 1026 120 2 46 1019 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_01_008400778 chr19:10601735-10606850 Sample_01_0084 Spleen spleen 778 1 118 12 0 14 160 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_02_043100307 chr19:10601747-10624043 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 307 5 625 74 0 16 160 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_00_000900336 chr19:10602092-10623606 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 336 3 611 72 0 16 160 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_02_015000525 chr19:10602096-10619736 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 525 2 503 65 0 16 160 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_00_000500287 chr19:10602113-10605568 Sample_00_0005 Blood B-cell 287 1 87 10 0 14 160 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,MIR1238,KRI1
SE_02_014800547 chr19:10602359-10605338 Sample_02_0148 Blood CD8_T_cells 547 1 75 8 0 14 129 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,KRI1
SE_02_002200559 chr19:10602407-10623381 Sample_02_0022 Blood CD8donorA 559 3 605 71 0 16 105 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,KRI1
SE_02_036500223 chr19:10602411-10628183 Sample_02_0365 Skeletal muscle NCI0075 223 4 723 82 0 27 470 SLC44A2,LOC147727,AP1M2,ILF3,CDKN2D,KRI1
SE_02_021600512 chr19:10660431-10693924 Sample_02_0216 Skin NHEK_scramble 512 7 1103 64 4 210 2576 ILF3,LOC147727,MIR638,DNM2,SLC44A2,QTRT1
SE_02_007300675 chr19:10670901-10692388 Sample_02_0073 Other 90-8TL_DMSO 675 10 677 33 4 205 2512 ILF3,LOC147727,MIR638,DNM2,SLC44A2,QTRT1
Genomic distribution of SEs associated with LOC147727
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC147727

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)