SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: LOC100507006 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_073500477 chr2:64179626-64223632 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 477 11 1251 95 6 169 506 LINC00309,LOC100507006,PELI1
SE_02_073000523 chr2:64179803-64220451 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 523 8 1155 90 6 141 506 LINC00309,LOC100507006,PELI1
SE_02_092800306 chr2:64187198-64225154 Sample_02_0928 Peripheral blood neutrophils_Ecoli 306 11 1071 78 5 142 444 LINC00309,LOC100507006,PELI1,VPS54
SE_02_075100586 chr2:64189324-64224435 Sample_02_0751 Lymphoma Rec-1_WO 586 18 1000 73 5 138 406 LINC00309,LOC100507006,PELI1
SE_02_075000528 chr2:64189340-64224300 Sample_02_0750 Lymphoma Rec-1_GSI 528 17 995 73 5 137 406 LINC00309,LOC100507006,PELI1
SE_02_153100093 chr2:64190047-64225110 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 93 11 988 72 5 138 406 LINC00309,LOC100507006,PELI1,VPS54
SE_02_131800515 chr2:64190084-64220165 Sample_02_1318 Brain hMGLs_SORL1-A528T 515 10 852 64 5 106 406 LINC00309,LOC100507006,PELI1
SE_02_117500337 chr2:64191133-64224549 Sample_02_1175 Brain GBM03 337 12 943 70 5 136 406 LINC00309,LOC100507006,PELI1
SE_02_081601735 chr2:64191576-64223685 Sample_02_0816 Ovary Clear cell ovarian cancer 1735 11 894 65 3 135 406 LINC00309,LOC100507006,PELI1
SE_02_146001122 chr2:64191758-64219932 Sample_02_1460 Blood Mutz-3 1122 5 782 60 3 102 406 LINC00309,LOC100507006,PELI1
SE_02_072900622 chr2:64192523-64220401 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 622 8 765 60 2 101 367 LINC00309,LOC100507006,PELI1
SE_02_072800412 chr2:64197526-64221470 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 412 8 647 56 1 107 364 LINC00309,LOC100507006
SE_02_073100566 chr2:64197580-64220542 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 566 4 617 53 1 96 364 LINC00309,LOC100507006
SE_02_073200619 chr2:64197591-64221609 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 619 8 649 55 1 111 364 LINC00309,LOC100507006
SE_02_073300587 chr2:64197694-64221287 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 587 7 633 55 1 106 364 LINC00309,LOC100507006
SE_02_078200729 chr2:64197721-64223960 Sample_02_0782 Blood MEC1 729 9 707 59 1 124 364 LINC00309,LOC100507006
SE_02_126401353 chr2:64200738-64215127 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1353 3 397 36 0 54 364 LINC00309,LOC100507006
SE_02_071300835 chr2:64200825-64215664 Sample_02_0713 Pancreas BxPC3_sgTP63 835 5 406 36 0 55 364 LINC00309,LOC100507006
SE_02_070700302 chr2:64201330-64215426 Sample_02_0707 Pancreas BxPC3 WT 302 6 391 35 0 55 333 LINC00309,LOC100507006
SE_02_071200563 chr2:64201418-64215553 Sample_02_0712 Pancreas BxPC3_sgNEG 563 2 391 35 0 52 324 LINC00309,LOC100507006
SE_02_111500172 chr2:64201621-64223238 Sample_02_1115 Liver HepG2 172 6 594 48 0 91 313 LINC00309,LOC100507006
SE_02_142900918 chr2:64201843-64223649 Sample_02_1429 Blood GM12878_WT 918 4 600 49 0 92 313 LINC00309,LOC100507006,LGALSL,PELI1,AFTPH
SE_02_111300293 chr2:64202003-64223050 Sample_02_1113 Bone U2OS 293 6 575 47 0 89 313 LINC00309,LOC100507006
SE_02_136600583 chr2:64202026-64215186 Sample_02_1366 Pancreas BxPC3-untreated 583 6 368 33 0 50 313 LINC00309,LOC100507006
SE_02_126701563 chr2:64202182-64214902 Sample_02_1267 Bone Im-GCT-4072_G34W 1563 2 353 31 0 48 313 LINC00309,LOC100507006
SE_02_124800623 chr2:64202246-64214617 Sample_02_1248 Bladder RT4 623 4 344 31 0 48 313 LINC00309,LOC100507006
SE_02_045700476 chr2:64202557-64215783 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 476 5 367 33 0 50 313 LINC00309,LOC100507006
SE_02_151200748 chr2:64203230-64215095 Sample_02_1512 Lung Purified AT2 cells 748 4 340 33 0 35 285 LINC00309,LOC100507006
SE_02_122300844 chr2:64206874-64224487 Sample_02_1223 Bone marrow KMS28BM 844 4 482 41 0 67 0 LOC100507006,LINC00309
SE_02_045500701 chr2:64207270-64216986 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 701 5 272 28 0 29 0 LOC100507006,LINC00309
SE_02_081601631 chr2:64252636-64288721 Sample_02_0816 Ovary Clear cell ovarian cancer 1631 11 1036 97 3 80 0 LOC100507006,LINC00309
SE_02_153000470 chr2:64258008-64285825 Sample_02_1530 Peripheral blood neutrophils_0BA0X 470 9 747 68 3 80 0 LOC100507006,PELI1
SE_02_105800632 chr2:64258740-64289270 Sample_02_1058 Bone A673_SA2 Rescue 632 17 818 68 3 76 0 LOC100507006
SE_02_131400634 chr2:64259027-64282690 Sample_02_1314 Brain hMGLs_TREM2-KO 634 6 611 53 3 70 0 LOC100507006
SE_02_084000318 chr2:64259075-64290520 Sample_02_0840 Embryo hNPCs_R1159Q/+ 318 12 848 71 4 73 0 LOC100507006
SE_02_153100383 chr2:64259373-64284491 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 383 6 667 57 3 67 0 LOC100507006,PELI1
SE_02_058500457 chr2:64259677-64288615 Sample_02_0585 Umbilical vein HUVEC 0hour 457 13 781 66 3 67 0 LOC100507006
SE_02_117500491 chr2:64259761-64283546 Sample_02_1175 Brain GBM03 491 6 623 53 3 64 0 LOC100507006
SE_02_130800234 chr2:64259942-64275609 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 234 4 385 34 1 62 0 LOC100507006
SE_02_058600777 chr2:64260173-64333036 Sample_02_0586 Chordal patient-derived chordoma MGH_4 777 15 1998 164 7 66 0 LOC100507006,MIR4433B,MIR4433A
SE_02_083100461 chr2:64260223-64289254 Sample_02_0831 Umblical vein HUVECs_TNF0min 461 18 782 66 3 66 0 LOC100507006
SE_02_156900415 chr2:64260224-64277784 Sample_02_1569 Endothelial Endothelial cells 415 4 432 37 2 61 0 LOC100507006
SE_02_095001282 chr2:64260238-64277749 Sample_02_0950 Umbilical vein HUVEC_WT 1282 12 432 37 2 61 0 LOC100507006
SE_02_062000397 chr2:64260284-64274687 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 397 9 361 33 1 61 0 LOC100507006
SE_02_130900394 chr2:64260343-64277111 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 394 4 413 37 2 61 0 LOC100507006
SE_02_077101121 chr2:64260649-64278503 Sample_02_0771 Ovary OVCA429_shGRHL2 1121 12 451 38 2 61 0 LOC100507006
SE_02_055700608 chr2:64260856-64290163 Sample_02_0557 iPSCs WT hiPSC#1 608 10 798 66 3 66 0 LOC100507006
SE_02_049101134 chr2:64261928-64279089 Sample_02_0491 Pharyng Detroit 562-Control 1134 5 438 36 2 60 0 LOC100507006
SE_02_049201152 chr2:64261948-64280298 Sample_02_0492 Pharyng Detroit 562_LPS 1152 9 465 39 2 62 0 LOC100507006
SE_02_076600514 chr2:64262123-64279390 Sample_02_0766 Ovary PEO1 514 13 439 36 2 60 0 LOC100507006
SE_02_083900689 chr2:64262319-64290375 Sample_02_0839 Embryo hNPCs_K755R/+ 689 8 758 60 4 61 0 LOC100507006
SE_02_048000730 chr2:64262380-64278268 Sample_02_0480 Gingival epithelial HGEP 730 6 394 28 2 56 0 LOC100507006
SE_02_112000660 chr2:64262681-64277592 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 660 9 363 27 2 55 0 LOC100507006
SE_02_074801019 chr2:64262719-64278879 Sample_02_0748 Mammary gland HCC1599_WO 1019 5 412 33 2 55 0 LOC100507006
SE_02_152600400 chr2:64263126-64279513 Sample_02_1526 Lung PC9 DMSO 400 5 407 34 2 54 0 LOC100507006
Genomic distribution of SEs associated with LOC100507006
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC100507006

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)