Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000233610
Gene: LINC00462 Gene type: lncRNA
Strand: - External links:
Genomic region: chr13:48576974-48578088 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111900243 chr13:48474925-48543407 Sample_02_1119 Blood KBM7 243 28 1639 102 4 147 1226 RCBTB2,RB1,LPAR6,LINC00462
SE_02_090800417 chr13:48475234-48544645 Sample_02_0908 Heart left ventricle_DCM_LV1262 417 18 1664 107 4 147 1226 RCBTB2,RB1,LPAR6,LINC00462
SE_02_117400257 chr13:48475516-48542830 Sample_02_1174 Brain GBM02 257 26 1612 102 4 146 1226 RCBTB2,RB1,LPAR6,LINC00462
SE_02_118500311 chr13:48476446-48550152 Sample_02_1185 Brain GBM14 311 18 1776 116 4 159 1226 RCBTB2,RB1,LPAR6,LINC00462
SE_02_090000517 chr13:48476580-48543498 Sample_02_0900 Heart left ventricle_LV1452 517 12 1603 104 4 146 1223 RCBTB2,RB1,LPAR6,LINC00462
SE_01_010700425 chr13:48476679-48543222 Sample_01_0107 Esophagus esophagus squamous epithelium 425 15 1597 102 4 146 1218 RCBTB2,RB1,LPAR6,LINC00462
SE_02_125000083 chr13:48476772-48543473 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 83 28 1597 104 4 142 1214 RCBTB2,RB1,LPAR6,LINC00462
SE_02_088800807 chr13:48477706-48543532 Sample_02_0888 Heart left ventricle_LV1160 807 14 1577 102 4 138 1177 RCBTB2,RB1,LPAR6,LINC00462
SE_02_045400054 chr13:48485156-48543214 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 54 13 1432 97 4 114 1036 RCBTB2,LPAR6,LINC00462
SE_02_045600232 chr13:48485478-48533810 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 232 11 1207 75 3 107 945 RCBTB2,LPAR6,LINC00462
SE_02_077600248 chr13:48490294-48544149 Sample_02_0776 Pancreas EndoC-BH1 248 8 1349 96 4 104 928 RCBTB2,LPAR6,LINC00462
SE_02_089600566 chr13:48490843-48544005 Sample_02_0896 Heart left ventricle_LV1294 566 13 1331 95 4 104 920 RCBTB2,LPAR6,LINC00462
SE_02_089700897 chr13:48491401-48543705 Sample_02_0897 Heart left ventricle_LV1325 897 8 1315 95 4 104 920 RCBTB2,LPAR6,LINC00462
SE_02_088900908 chr13:48491537-48543917 Sample_02_0889 Heart left ventricle_LV1183 908 11 1315 95 3 104 920 RCBTB2,LPAR6,LINC00462
SE_02_089200938 chr13:48491596-48543567 Sample_02_0892 Heart left ventricle_LV1215 938 8 1307 95 3 104 920 RCBTB2,LPAR6,LINC00462
SE_02_046500859 chr13:48518006-48546424 Sample_02_0465 Adipose subcutaneous adipocytes 859 16 681 51 1 43 364 RCBTB2,LINC00462
SE_02_091801222 chr13:48523533-48543566 Sample_02_0918 Heart left ventricle_DCM_LV1437 1222 4 480 36 1 15 281 RCBTB2,LINC00462
SE_02_122401125 chr13:48524317-48543119 Sample_02_1224 Bone marrow normal plasma cell 1125 5 451 33 1 13 281 RCBTB2,LINC00462
SE_02_125200461 chr13:48525503-48543381 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 461 6 432 32 1 11 249 RCBTB2,LINC00462
SE_02_124900509 chr13:48525552-48543337 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 509 10 430 32 1 11 249 RCBTB2,LINC00462
SE_02_121900353 chr13:48526316-48543298 Sample_02_1219 Bone marrow H929 353 2 416 32 1 11 249 RCBTB2,LINC00462
SE_02_092001125 chr13:48526975-48543537 Sample_02_0920 Heart left ventricle_DCM_LV1535 1125 5 395 33 1 11 249 RCBTB2,LINC00462
SE_02_090601320 chr13:48527440-48543864 Sample_02_0906 Heart left ventricle_DCM_LV1072 1320 3 390 34 1 11 249 RCBTB2,LINC00462
SE_02_155401177 chr13:48527483-48544289 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 1177 7 406 34 1 11 249 RCBTB2,LINC00462
SE_02_135000443 chr13:48527489-48543421 Sample_02_1350 Leukophereses leukophereses_p456 443 5 381 31 1 11 249 RCBTB2,LINC00462
SE_02_091500954 chr13:48527502-48543461 Sample_02_0915 Heart left ventricle_DCM_LV1371 954 4 382 32 1 11 249 RCBTB2,LINC00462
SE_02_156001022 chr13:48527503-48548173 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1022 5 510 43 1 23 249 RCBTB2,LINC00462
SE_02_090901269 chr13:48527569-48544301 Sample_02_0909 Heart left ventricle_DCM_LV1264 1269 5 404 34 1 11 249 RCBTB2,LINC00462
SE_02_068200302 chr13:48527898-48543334 Sample_02_0682 Blood Kasumi-1 302 5 370 31 1 11 249 RCBTB2,LINC00462
SE_02_134800378 chr13:48530227-48537369 Sample_02_1348 Leukophereses leukophereses_p408 378 5 185 15 0 2 249 RCBTB2,LINC00462
SE_02_057500809 chr13:48531367-48543400 Sample_02_0575 Blood MOLM13_sgLKB1e2 809 3 303 28 1 9 249 RCBTB2,LINC00462
SE_02_080800388 chr13:48582968-48603775 Sample_02_0808 Ovary RMG1_ARID1A KO 388 7 628 67 1 15 0 RCBTB2,LINC00462,CYSLTR2
SE_02_082100323 chr13:48615449-48628363 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 323 3 421 47 1 4 0 LINC00462,CYSLTR2
SE_02_075201317 chr13:48619179-48647301 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1317 9 816 87 4 14 0 LINC00462,CYSLTR2
SE_02_049300482 chr13:48619842-48627823 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 482 4 254 28 1 4 0 LINC00462,CYSLTR2
SE_02_080800726 chr13:48622104-48641192 Sample_02_0808 Ovary RMG1_ARID1A KO 726 8 556 61 4 7 0 LINC00462,CYSLTR2
SE_02_149300401 chr13:48622609-48660897 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 401 11 1023 104 6 33 49 CYSLTR2,LINC00462
SE_02_082000414 chr13:48623268-48627878 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 414 1 139 16 1 4 0 LINC00462,CYSLTR2
SE_02_068500678 chr13:48628420-48633658 Sample_02_0685 Lung NCI-H1048_no infection 678 1 153 11 2 3 0 LINC00462,CYSLTR2

Genomic distribution of SEs associated with LINC00462

The strength of the tissue affected by the gene


Expression of LINC00462