SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000203801
Gene: LINC00222 Gene type: lncRNA
Strand: + External links:
Genomic region: chr6:108751654-108769942 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044500126 chr6:108550341-108712483 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 126 66 4069 157 27 498 1488 FOXO3,LINC00222
SE_02_091000013 chr6:108554668-108714691 Sample_02_0910 Heart left ventricle_DCM_LV1275 13 69 4016 150 27 500 1488 FOXO3,LINC00222
SE_02_089100042 chr6:108554987-108710296 Sample_02_0891 Heart left ventricle_LV1202 42 47 3872 143 25 494 1488 FOXO3,LINC00222
SE_02_090100044 chr6:108555027-108714639 Sample_02_0901 Heart left ventricle_LV1471 44 77 4005 147 26 500 1488 FOXO3,LINC00222
SE_02_091300048 chr6:108555091-108714627 Sample_02_0913 Heart left ventricle_DCM_LV1304 48 64 4002 147 26 500 1488 FOXO3,LINC00222
SE_02_090700047 chr6:108555152-108714663 Sample_02_0907 Heart left ventricle_DCM_LV1223 47 73 4002 147 26 500 1488 FOXO3,LINC00222
SE_01_009300953 chr6:108649365-108714723 Sample_01_0093 Aorta ascending aorta 953 12 1752 86 15 214 916 FOXO3,LINC00222
SE_02_053300548 chr6:108649621-108714488 Sample_02_0533 Blood vessel Circle of Willis_54y 548 22 1734 86 15 214 916 FOXO3,LINC00222
SE_02_104602924 chr6:108689249-108739964 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2924 14 1361 74 9 71 0 LINC00222
SE_02_076601172 chr6:108713399-108748741 Sample_02_0766 Ovary PEO1 1172 12 940 63 5 77 0 LINC00222
SE_02_105500105 chr6:108729314-108742536 Sample_02_1055 Esophagus KYAE1 105 3 335 21 3 33 0 LINC00222
SE_02_102500990 chr6:108729533-108747742 Sample_02_1025 Esophagus KYSE150 990 8 493 31 3 48 0 LINC00222
SE_02_061900674 chr6:108730746-108746401 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 674 5 427 24 3 43 0 LINC00222
SE_02_103700367 chr6:108730780-108747805 Sample_02_1037 Pharynx FaDu Control 367 4 457 27 3 48 0 LINC00222
SE_02_071301285 chr6:108730897-108746350 Sample_02_0713 Pancreas BxPC3_sgTP63 1285 7 422 23 2 43 0 LINC00222
SE_02_088601789 chr6:108731342-108739921 Sample_02_0886 Skin foreskin_ p63KLF4 1789 3 206 9 1 16 0 LINC00222
SE_02_123000310 chr6:108731469-108747003 Sample_02_1230 Lung PC9 310 7 423 24 2 47 0 LINC00222,ARMC2
SE_02_123100150 chr6:108731516-108746376 Sample_02_1231 Lung PC9_siMED13L-1 150 5 412 22 2 43 0 LINC00222,ARMC2
SE_02_123300222 chr6:108731563-108746488 Sample_02_1233 Lung PC9_miR-4497 mimic 222 6 414 22 2 43 0 LINC00222,ARMC2
SE_02_125400994 chr6:108731667-108742612 Sample_02_1254 Bladder Bladder tumor Basal1 994 3 275 12 2 33 0 LINC00222
SE_02_123200262 chr6:108731861-108742189 Sample_02_1232 Lung PC9_siMED13L-2 262 6 259 11 2 31 0 LINC00222,ARMC2
SE_02_071100851 chr6:108733061-108747222 Sample_02_0711 Pancreas hN35_organoid 851 9 390 22 2 37 0 LINC00222
SE_02_071900781 chr6:108733141-108742490 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 781 3 238 10 2 23 0 LINC00222
SE_02_124800484 chr6:108735130-108742800 Sample_02_1248 Bladder RT4 484 2 195 8 1 20 0 LINC00222
SE_02_110900354 chr6:108778457-108810040 Sample_02_1109 Brain SK-N-FI 354 13 787 39 3 48 0 LINC00222,ARMC2
SE_02_106400324 chr6:108782158-108806600 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 324 6 619 31 3 17 0 LINC00222,ARMC2
SE_02_106300228 chr6:108792602-108806987 Sample_02_1063 Brain CLB-GA-control 228 5 387 19 2 21 0 LINC00222,ARMC2
Genomic distribution of SEs associated with LINC00222
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00222

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)