SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000267690
Gene: LDLRAD4-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr18:13419421-13427480 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_057600194 chr18:13304725-13409591 Sample_02_0576 Blood HEL_sgLKB1e2 194 46 3088 74 44 108 163 LDLRAD4,LDLRAD4-AS1
SE_02_058000205 chr18:13306219-13409371 Sample_02_0580 Blood HEL_sgSIK3e4 205 38 3040 74 44 105 163 LDLRAD4,LDLRAD4-AS1
SE_02_057900177 chr18:13306878-13409506 Sample_02_0579 Blood HEL_sgNeg2 177 41 3026 74 44 108 163 LDLRAD4,LDLRAD4-AS1
SE_02_131500401 chr18:13352534-13389705 Sample_02_1315 Brain hMGLs_INPP5D SNP 401 13 1082 16 12 83 163 LDLRAD4,LDLRAD4-AS1
SE_02_131300491 chr18:13352541-13383450 Sample_02_1313 Brain hMGLs_CD33_SNP 491 12 894 14 12 77 0 LDLRAD4,LDLRAD4-AS1
SE_02_131400449 chr18:13352627-13383661 Sample_02_1314 Brain hMGLs_TREM2-KO 449 12 899 14 12 77 0 LDLRAD4,LDLRAD4-AS1
SE_02_131200330 chr18:13352745-13383555 Sample_02_1312 Brain hMGLs_WT 330 14 892 14 12 77 0 LDLRAD4,LDLRAD4-AS1
SE_02_131700256 chr18:13352773-13384145 Sample_02_1317 Brain hMGLs_SORL1-KO 256 12 912 14 12 77 0 LDLRAD4,LDLRAD4-AS1
SE_02_117400931 chr18:13353187-13383855 Sample_02_1174 Brain GBM02 931 12 891 14 12 77 0 LDLRAD4,LDLRAD4-AS1
SE_02_155301057 chr18:13364564-13390702 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1057 12 791 7 6 72 163 LDLRAD4,LDLRAD4-AS1
SE_02_120501070 chr18:13366007-13398772 Sample_02_1205 Brain NB3 1070 13 962 7 4 78 163 LDLRAD4,LDLRAD4-AS1
SE_02_104800723 chr18:13367835-13383842 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 723 14 491 4 1 66 0 LDLRAD4,LDLRAD4-AS1
SE_02_066300812 chr18:13369098-13397806 Sample_02_0663 Thyroid TT 812 11 834 6 1 78 163 LDLRAD4,LDLRAD4-AS1
SE_02_104301577 chr18:13369308-13401931 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1577 14 961 10 3 78 163 LDLRAD4,LDLRAD4-AS1
SE_02_104100038 chr18:13369341-13400827 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 38 19 921 9 2 78 163 LDLRAD4,LDLRAD4-AS1
SE_02_104200341 chr18:13369377-13383585 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 341 15 425 3 1 66 0 LDLRAD4,LDLRAD4-AS1
SE_02_047401323 chr18:13369396-13389128 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1323 5 597 5 1 72 163 LDLRAD4,LDLRAD4-AS1
SE_02_063900075 chr18:13369435-13402231 Sample_02_0639 Blood T-ALL PDX 75 13 965 10 3 79 163 LDLRAD4,LDLRAD4-AS1
SE_02_104400303 chr18:13371144-13383776 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 303 8 381 1 1 66 0 LDLRAD4,LDLRAD4-AS1
SE_00_004700234 chr18:13372233-13383704 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 234 5 339 0 1 66 0 LDLRAD4,LDLRAD4-AS1
SE_02_045700605 chr18:13374079-13383505 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 605 3 288 0 1 47 0 LDLRAD4,LDLRAD4-AS1
SE_02_118601149 chr18:13374388-13390125 Sample_02_1186 Brain GBM15 1149 5 471 2 1 53 163 LDLRAD4,LDLRAD4-AS1
SE_02_061301103 chr18:13374577-13389488 Sample_02_0613 Liposarcoma MLPS_T1 1103 11 451 2 1 53 163 LDLRAD4,LDLRAD4-AS1
SE_02_059200063 chr18:13374776-13385828 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 63 5 331 0 1 47 0 LDLRAD4,LDLRAD4-AS1
SE_02_059100378 chr18:13374892-13384133 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 378 5 274 0 1 47 0 LDLRAD4,LDLRAD4-AS1
SE_02_059300680 chr18:13374902-13383600 Sample_02_0593 Fetal spleenocytes fetal naive T cells 680 4 257 0 1 47 0 LDLRAD4,LDLRAD4-AS1
SE_02_130901047 chr18:13374957-13388659 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1047 4 407 1 1 53 163 LDLRAD4,LDLRAD4-AS1
SE_02_073600416 chr18:13374979-13383226 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 416 5 241 0 1 45 0 LDLRAD4,LDLRAD4-AS1
SE_02_143000594 chr18:13380148-13383513 Sample_02_1430 Blood Kasumi-3_mock-infected 594 1 103 0 0 20 0 LDLRAD4,LDLRAD4-AS1,MIR5190
SE_02_048800455 chr18:13381222-13382967 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 455 2 50 0 0 19 0 LDLRAD4,LDLRAD4-AS1,MIR5190
SE_02_048200409 chr18:13381423-13383285 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 409 1 49 0 0 20 0 LDLRAD4,LDLRAD4-AS1
SE_02_124900246 chr18:13429706-13466939 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 246 11 1181 43 9 94 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_073900185 chr18:13432311-13467871 Sample_02_0739 Blood Nalm6 185 14 1115 42 5 94 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_130000359 chr18:13432348-13445612 Sample_02_1300 Blood KARPAS-45 359 1 400 6 3 31 68 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_088500107 chr18:13432452-13467536 Sample_02_0885 Blood NALM6_2 107 7 1103 42 4 94 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_139800456 chr18:13432842-13453324 Sample_02_1398 Bone U2OS_siNC 456 12 666 14 3 53 68 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_128000924 chr18:13432892-13467412 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 924 8 1087 42 4 94 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_057300094 chr18:13433223-13483033 Sample_02_0573 Blood Nalm6_1 94 16 1548 84 4 119 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_111500735 chr18:13433311-13452352 Sample_02_1115 Liver HepG2 735 4 616 12 3 53 68 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_111300671 chr18:13434831-13452495 Sample_02_1113 Bone U2OS 671 4 571 12 3 53 68 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_104100111 chr18:13434866-13462470 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 111 12 900 28 3 71 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_063900043 chr18:13434869-13456548 Sample_02_0639 Blood T-ALL PDX 43 17 699 16 3 69 68 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_118700038 chr18:13434870-13578113 Sample_02_1187 Brain GBM16 38 48 4584 334 11 210 475 LDLRAD4,MIR5190,MIR4526,LDLRAD4-AS1
SE_02_125000232 chr18:13434874-13467248 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 232 10 1020 41 4 93 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_125100269 chr18:13434876-13467048 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 269 14 1016 41 4 92 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_075800106 chr18:13434928-13482917 Sample_02_0758 Peripheral blood REH 106 11 1493 84 4 119 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_106900241 chr18:13434937-13482888 Sample_02_1069 Bone marrow Bone marrow aspirate 241 10 1492 84 4 119 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_125200222 chr18:13435104-13467251 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 222 13 1014 41 4 93 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_118600226 chr18:13435226-13503573 Sample_02_1186 Brain GBM15 226 21 2214 160 6 128 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_121600089 chr18:13435323-13466067 Sample_02_1216 Blood Jurkat ZBTB1 KO 89 5 982 38 4 87 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_121500113 chr18:13435405-13465964 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 113 7 977 38 4 87 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_111200255 chr18:13435422-13488285 Sample_02_1112 T lymphocyte THP-6 T-ALL 255 10 1633 104 6 117 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_121400094 chr18:13435450-13465768 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 94 10 971 38 4 87 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_121700118 chr18:13435453-13465893 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 118 11 975 38 4 87 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_061301144 chr18:13435481-13482274 Sample_02_0613 Liposarcoma MLPS_T1 1144 10 1460 82 4 117 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_117400032 chr18:13435511-13580429 Sample_02_1174 Brain GBM02 32 86 4639 336 11 208 475 LDLRAD4,MIR5190,MIR4526,LDLRAD4-AS1
SE_02_158500144 chr18:13435559-13466888 Sample_02_1585 Blood SupB15 DMSO 144 13 990 40 4 88 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_157400035 chr18:13435792-13465736 Sample_02_1574 Blood JURKAT 35 19 960 38 4 86 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_119700419 chr18:13435845-13503724 Sample_02_1197 Brain GBM33 419 30 2208 160 6 127 475 LDLRAD4,MIR5190,LDLRAD4-AS1,MIR4526
SE_02_118800371 chr18:13436003-13503705 Sample_02_1188 Brain GBM18 371 16 2203 160 6 125 475 LDLRAD4,MIR5190,LDLRAD4-AS1,MIR4526
SE_02_092400416 chr18:13436466-13513720 Sample_02_0924 Heart fetal heart_PCW10_12569 416 21 2543 233 8 125 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_097900233 chr18:13436727-13503885 Sample_02_0979 Brain JN14-BS1_H3.3K27M 233 24 2191 159 6 125 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_119101115 chr18:13436762-13482356 Sample_02_1191 Brain GBM25 1115 15 1432 81 4 115 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_133000842 chr18:13436855-13482289 Sample_02_1330 Blood AMU-AML1 842 15 1425 81 4 114 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_092300680 chr18:13436876-13513896 Sample_02_0923 Heart fetal heart_PCW10_12522 680 18 2533 232 8 124 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_104800558 chr18:13436972-13489558 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 558 16 1629 109 6 114 475 LDLRAD4,MIR5190,LDLRAD4-AS1,MIR4526
SE_02_104300992 chr18:13436979-13506074 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 992 22 2278 180 7 124 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_097700081 chr18:13436981-13513344 Sample_02_0977 Brain 2089_H3.3K27WT 81 22 2517 232 8 124 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_092200654 chr18:13436994-13513921 Sample_02_0922 Heart fetal heart_PCW10_12434 654 15 2531 232 8 124 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_104600747 chr18:13437001-13506053 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 747 28 2276 180 7 124 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_120400060 chr18:13437008-13588453 Sample_02_1204 Brain NB2 60 40 4834 337 11 234 475 LDLRAD4,MIR5190,MIR4526,LDLRAD4-AS1
SE_02_107100241 chr18:13437052-13463155 Sample_02_1071 Blood Jurkat_WT 241 14 863 29 3 66 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_096600143 chr18:13437398-13513836 Sample_02_0966 Brain H3.3K27M_JN29-BS3 143 22 2516 231 8 124 475 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_119600099 chr18:13437811-13588299 Sample_02_1196 Brain GBM32 99 66 4812 336 11 234 475 LDLRAD4,MIR5190,MIR4526,LDLRAD4-AS1
SE_02_055300345 chr18:13440704-13485628 Sample_02_0553 Other HSSY2 shCt 345 18 1399 90 4 98 407 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_103900454 chr18:13450628-13484182 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 454 4 1013 82 1 68 407 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_061700631 chr18:13451320-13514084 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 631 9 2060 222 5 78 407 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_119301045 chr18:13462699-13503758 Sample_02_1193 Brain GBM27 1045 10 1329 132 3 58 0 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_092500197 chr18:13470484-13585970 Sample_02_0925 Heart fetal heart_PCW17_12570 197 29 3705 287 7 143 0 LDLRAD4,MIR5190,MIR4526,LDLRAD4-AS1
SE_02_085200520 chr18:13474803-13557868 Sample_02_0852 Mammary gland MCF7L-P 520 27 2677 232 6 54 0 LDLRAD4,MIR5190,LDLRAD4-AS1
SE_02_115900520 chr18:13474803-13557868 Sample_02_1159 Mammary gland MCF7 520 27 2677 232 6 54 0 LDLRAD4,MIR5190,LDLRAD4-AS1
Genomic distribution of SEs associated with LDLRAD4-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of LDLRAD4-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)