SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000198728
Gene: LDB1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:102106489-102120368 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104701247 chr10:102004750-102067846 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1247 14 1426 89 3 140 1315 HPS6,C10ORF76,LDB1
SE_02_104900884 chr10:102034677-102072775 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 884 20 907 64 3 62 870 HPS6,C10ORF76,LDB1
SE_02_103200575 chr10:102051131-102080524 Sample_02_1032 Head and neck SCC1 JQ1 575 7 690 39 1 55 817 HPS6,C10ORF76,LDB1
SE_02_102900380 chr10:102053285-102074618 Sample_02_1029 Colon HCT116 380 5 514 31 1 55 817 HPS6,C10ORF76,LDB1
SE_02_103000635 chr10:102054086-102067686 Sample_02_1030 Colon DKO 635 3 315 19 1 48 734 HPS6,C10ORF76,LDB1
SE_02_106000610 chr10:102115016-102120183 Sample_02_1060 Bone TC71_SA2 KO 610 1 121 6 0 75 116 LDB1,HPS6,PPRC1,NOLC1
SE_02_006400950 chr10:102115022-102134605 Sample_02_0064 Embryo DN-Early_G1 950 5 493 33 1 198 365 PPRC1,LDB1,NOLC1,HPS6
SE_02_035000401 chr10:102115037-102133656 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 401 3 477 33 1 179 361 PPRC1,LDB1,NOLC1,HPS6
SE_02_004300511 chr10:102115051-102133515 Sample_02_0043 Embryo endodermal CyT49_ES_D2 511 3 474 32 1 165 352 PPRC1,LDB1,NOLC1,HPS6
SE_00_005600806 chr10:102115075-102122766 Sample_00_0056 Sigmoid colon sigmoid colon 3y 806 3 175 9 1 143 203 LDB1,HPS6,PPRC1,NOLC1
SE_02_092400579 chr10:102116061-102122867 Sample_02_0924 Heart fetal heart_PCW10_12569 579 1 157 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_108200991 chr10:102116074-102122369 Sample_02_1082 Retina retina 991 1 149 8 1 134 193 LDB1,PPRC1,NOLC1
SE_02_118100870 chr10:102116203-102122244 Sample_02_1181 Brain GBM10 870 1 145 7 1 134 193 LDB1,PPRC1,NOLC1
SE_02_025300481 chr10:102116302-102122570 Sample_02_0253 Brain BE2C_DMSO 481 1 140 8 1 134 193 LDB1,NOLC1,PPRC1
SE_02_148300840 chr10:102116331-102123182 Sample_02_1483 Bone RD-ES 840 2 153 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_101600938 chr10:102116393-102128614 Sample_02_1016 Embryo H9_Mesendoderm_24h 938 2 302 22 1 135 193 LDB1,PPRC1,NOLC1
SE_02_090601201 chr10:102116431-102122750 Sample_02_0906 Heart left ventricle_DCM_LV1072 1201 1 144 9 1 135 193 LDB1,PPRC1,NOLC1
SE_00_001000814 chr10:102116447-102122460 Sample_00_0010 Embryo endodermal-cell 814 1 138 8 1 134 193 LDB1,NOLC1,PPRC1
SE_02_027600390 chr10:102116452-102122441 Sample_02_0276 Retina FW15 390 1 137 8 1 134 193 LDB1,NOLC1,PPRC1
SE_00_001600086 chr10:102116487-102134358 Sample_00_0016 Foreskin iPS-DF-19.11 91 2 452 32 1 185 331 PPRC1,LDB1,NOLC1
SE_02_095500413 chr10:102116532-102121510 Sample_02_0955 Brain IDH1_2469 413 1 120 6 1 123 193 LDB1,PPRC1,NOLC1
SE_02_033900306 chr10:102116558-102135237 Sample_02_0339 Neuroblastoma NGP 306 2 469 35 2 187 331 PPRC1,LDB1,NOLC1
SE_02_108800623 chr10:102116569-102123148 Sample_02_1088 Mammary gland T47D_shCtrl_45min 623 3 145 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_012500593 chr10:102116590-102135463 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 593 2 473 35 2 188 331 PPRC1,LDB1,NOLC1
SE_02_124500273 chr10:102116670-102122374 Sample_02_1245 Brain LAN5_Ethanol 273 1 127 8 1 134 193 LDB1,PPRC1,NOLC1
SE_02_001900196 chr10:102116677-102122912 Sample_02_0019 Embryo Neural crest cells 196 1 136 9 1 135 193 LDB1,NOLC1,PPRC1
SE_02_158401055 chr10:102116684-102128909 Sample_02_1584 Brain U87 GBM_Mock 1055 2 298 22 1 135 193 LDB1,PPRC1,NOLC1
SE_02_096900832 chr10:102116696-102121617 Sample_02_0969 Brain H3.3K27M_PL637 832 1 118 6 1 131 193 LDB1,PPRC1,NOLC1
SE_02_022000350 chr10:102116696-102135051 Sample_02_0220 Brain BE2C_1 350 2 460 34 1 187 331 PPRC1,LDB1,NOLC1
SE_02_084001319 chr10:102116698-102122861 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1319 2 135 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_063100321 chr10:102116720-102123671 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 321 2 157 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_055500435 chr10:102116720-102137559 Sample_02_0555 Other HAP1_WT 435 4 524 38 2 195 331 LDB1,PPRC1,NOLC1
SE_02_061500710 chr10:102116769-102136403 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 710 4 494 37 2 190 331 LDB1,PPRC1,NOLC1
SE_00_001800313 chr10:102116774-102134619 Sample_00_0018 Dermal fibroblasts iPS-18axian 313 3 449 32 1 185 331 PPRC1,LDB1,NOLC1
SE_02_039601828 chr10:102116822-102121773 Sample_02_0396 Skin NHEK-D 1828 1 118 7 1 131 193 LDB1,NOLC1,PPRC1
SE_02_055600145 chr10:102116874-102122938 Sample_02_0556 iPSCs BOFS hiPSC cl1 145 1 133 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_142600912 chr10:102116887-102122276 Sample_02_1426 Shoulder fibroblast_341 912 1 122 7 1 134 193 LDB1,PPRC1,NOLC1
SE_02_126900761 chr10:102116896-102128703 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 761 2 289 22 1 135 193 LDB1,PPRC1,NOLC1
SE_02_109100475 chr10:102116927-102121489 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 475 1 108 6 1 121 193 LDB1,PPRC1,NOLC1
SE_02_055900256 chr10:102116929-102122727 Sample_02_0559 iPSCs FX52 iPSCs dC-T 256 2 127 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_122800520 chr10:102116963-102135069 Sample_02_1228 Mammary gland MDA-MB-231_2 520 4 454 34 1 187 331 LDB1,PPRC1,NOLC1
SE_02_152700245 chr10:102116968-102136082 Sample_02_1527 Embryo naive embryonic stem cell 245 5 482 36 2 188 331 LDB1,PPRC1,NOLC1
SE_02_113600476 chr10:102116973-102135065 Sample_02_1136 Bone U2OS-anaphase/telophase 476 4 454 34 1 187 331 LDB1,PPRC1,NOLC1
SE_02_055800233 chr10:102116984-102122570 Sample_02_0558 iPSCs FX52 iPSCs mock 233 2 121 8 1 134 193 LDB1,PPRC1,NOLC1
SE_00_004600753 chr10:102116996-102122461 Sample_00_0046 Heart right ventricle_34y 753 2 119 8 1 134 193 LDB1,PPRC1,NOLC1
SE_02_055700493 chr10:102117004-102122889 Sample_02_0557 iPSCs WT hiPSC#1 493 1 127 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_074200396 chr10:102117005-102122952 Sample_02_0742 Embryo ESCs_day0 396 3 127 9 1 135 193 LDB1,PPRC1,NOLC1
SE_00_002900314 chr10:102117021-102134890 Sample_00_0029 Ovary ovary 314 4 447 33 1 186 331 PPRC1,LDB1,NOLC1
SE_02_056000316 chr10:102117048-102122747 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 316 3 125 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_117200843 chr10:102117048-102122803 Sample_02_1172 Embryo H9 WT 843 2 125 9 1 135 193 LDB1,PPRC1,NOLC1
SE_01_011400365 chr10:102117056-102138013 Sample_01_0114 Colon HCT116_encode 365 4 527 38 2 197 380 LDB1,PPRC1,NOLC1
SE_00_005201176 chr10:102117059-102122804 Sample_00_0052 Heart left ventricle 3y 1176 2 125 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_081601756 chr10:102117084-102128430 Sample_02_0816 Ovary Clear cell ovarian cancer 1756 3 276 22 1 135 193 LDB1,PPRC1,NOLC1
SE_02_126001110 chr10:102117124-102128717 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 1110 4 283 22 1 135 193 LDB1,PPRC1,NOLC1
SE_02_074500431 chr10:102117144-102123006 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 431 2 125 9 1 135 193 LDB1,PPRC1,NOLC1
SE_01_003300422 chr10:102117163-102122795 Sample_01_0033 Embryo H9 422 2 121 9 1 135 193 LDB1,NOLC1,PPRC1
SE_02_067700392 chr10:102117178-102122732 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 392 3 120 9 1 135 193 LDB1,PPRC1,NOLC1
SE_00_005300486 chr10:102117181-102128157 Sample_00_0053 Embryo trophoblast cell originated from H1 486 4 269 22 1 135 193 LDB1,PPRC1,NOLC1
SE_02_074300396 chr10:102117230-102122849 Sample_02_0743 Embryo ES derived mesoderm_day2 396 2 122 9 1 135 193 LDB1,PPRC1,NOLC1
SE_02_114800328 chr10:102117264-102129081 Sample_02_1148 Kidney WT 9-12_control_vehicle 328 2 286 23 1 135 193 LDB1,PPRC1,NOLC1
SE_02_147000912 chr10:102117396-102149496 Sample_02_1470 Umbilical Vein H441 912 6 822 49 2 312 1751 LDB1,PPRC1,NOLC1
SE_02_103501972 chr10:102117489-102131181 Sample_02_1035 Mammary gland HCC70_Vehicle 1972 4 348 26 1 134 193 LDB1,PPRC1,NOLC1
SE_02_139400606 chr10:102117508-102130599 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 606 2 334 24 1 134 193 LDB1,PPRC1,NOLC1
SE_02_114900587 chr10:102117737-102128926 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 587 2 275 22 1 125 193 LDB1,PPRC1,NOLC1
SE_02_155700389 chr10:102118254-102123716 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 389 2 123 6 1 118 193 LDB1,PPRC1,NOLC1
SE_02_039601607 chr10:102132494-102135054 Sample_02_0396 Skin NHEK-D 1607 1 58 4 0 51 138 PPRC1,NOLC1,LDB1
SE_02_111201002 chr10:102135500-102167604 Sample_02_1112 T lymphocyte THP-6 T-ALL 1002 12 807 31 2 194 2503 PPRC1,NOLC1,LDB1
SE_02_138100595 chr10:102135652-102170016 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 595 16 862 37 2 196 2503 PPRC1,NOLC1,LDB1
SE_02_138300596 chr10:102137426-102170191 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 596 14 814 34 2 189 2503 PPRC1,NOLC1,LDB1
Genomic distribution of SEs associated with LDB1
Genome Browser

The strength of the tissue affected by the gene

Expression of LDB1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)