SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000188186
Gene: LAMTOR4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100148907-100155944 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101701432 chr7:100098052-100103574 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1432 1 188 17 1 77 1000 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_146900751 chr7:100098252-100103389 Sample_02_1469 Umbilical Vein HUVEC 751 1 178 16 0 70 935 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_058400578 chr7:100098533-100103067 Sample_02_0584 Lung H1299 WT 578 1 156 15 0 70 842 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_097200740 chr7:100098916-100103471 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 740 1 158 14 0 59 833 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_115900481 chr7:100098970-100103969 Sample_02_1159 Mammary gland MCF7 481 1 179 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_085200479 chr7:100098970-100103985 Sample_02_0852 Mammary gland MCF7L-P 479 1 180 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_068500232 chr7:100099223-100102912 Sample_02_0685 Lung NCI-H1048_no infection 232 1 130 12 0 51 718 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_096800486 chr7:100099326-100103103 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 486 1 129 12 0 51 732 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_085400627 chr7:100099443-100102847 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 627 1 111 12 0 44 668 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143300226 chr7:100099454-100103632 Sample_02_1433 Bone A673 STAG2 null 226 1 132 14 0 46 785 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143200448 chr7:100099468-100103022 Sample_02_1432 Bone A673 STAG2 WT 448 1 114 12 0 45 701 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126301470 chr7:100099469-100103470 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1470 1 129 13 0 46 758 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126800509 chr7:100099958-100104201 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 509 1 139 16 0 50 821 MCM7,AP4M1,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_04_000200715 chr7:100118281-100128369 Sample_04_0002 Blood cold shocked K562 715 1 266 21 1 64 1085 TAF6,CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35
SE_02_066300613 chr7:100121164-100138688 Sample_02_0663 Thyroid TT 613 2 419 51 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_115900219 chr7:100121196-100130282 Sample_02_1159 Mammary gland MCF7 219 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_085200218 chr7:100121198-100130279 Sample_02_0852 Mammary gland MCF7L-P 218 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_077500910 chr7:100121209-100141289 Sample_02_0775 Pancreas EndoC-BH1_SE 910 8 484 57 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,AZGP1
SE_02_123900308 chr7:100121229-100131083 Sample_02_1239 Skin Waga_virus_positive 308 2 244 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_107700261 chr7:100121509-100131164 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 261 3 240 20 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_109900847 chr7:100122193-100131089 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 847 3 202 15 1 43 854 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35,ZKSCAN5
SE_02_104901988 chr7:100156123-100159190 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1988 1 71 4 0 72 659 MIR4658,C7ORF43,TAF6,STAG3,MBLAC1,CNPY4,LAMTOR4,GPC2,GAL3ST4
SE_01_009600019 chr7:100178689-100231523 Sample_01_0096 B-cell lymphoma DOHH2 19 11 1350 180 3 96 3031 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_078400224 chr7:100180222-100222807 Sample_02_0784 Blood OSU-CLL 224 10 1107 143 3 96 2845 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_078200068 chr7:100180794-100224456 Sample_02_0782 Blood MEC1 68 14 1128 145 3 95 2938 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_130400358 chr7:100180896-100243795 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 358 20 1600 202 4 95 3021 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_077900138 chr7:100188836-100233871 Sample_02_0779 Lymphoma U2932 138 23 1138 151 3 79 2804 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_073900502 chr7:100188839-100200446 Sample_02_0739 Blood Nalm6 502 4 249 24 0 27 674 STAG3,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4,PVRIG
SE_02_088500710 chr7:100189265-100200467 Sample_02_0885 Blood NALM6_2 710 3 240 23 0 22 626 STAG3,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4,PVRIG
SE_02_130300415 chr7:100189288-100231733 Sample_02_1303 Lymphoma RL_tazemetostat 415 16 1082 144 3 74 2656 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_121800212 chr7:100189511-100231507 Sample_02_1218 Bone marrow Daudi 212 23 1074 143 3 72 2632 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_130200504 chr7:100189520-100231742 Sample_02_1302 Lymphoma RL DMSO 504 14 1079 143 3 72 2629 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_078300115 chr7:100189809-100223091 Sample_02_0783 Blood MEC2 115 12 866 112 3 72 2418 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_02_073600060 chr7:100192129-100222655 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 60 8 812 111 3 70 2372 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4
SE_00_005601002 chr7:100192185-100223061 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1002 11 821 111 3 70 2418 STAG3,PVRIG,GATS,C7ORF43,GPC2,LAMTOR4,MIR4658,GAL3ST4,SPDYE3,MBLAC1
Genomic distribution of SEs associated with LAMTOR4
Genome Browser

The strength of the tissue affected by the gene

Expression of LAMTOR4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)