SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000221852
Gene: KRTAP1-5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:41026026-41027208 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087801392 chr17:41048055-41064953 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1392 2 564 100 3 91 361 KRTAP9-7,KRTAP2-3,KRTAP2-2,KRTAP1-5,KRTAP2-1,KRTAP3-2,KRTAP1-1,KRTAP1-3,KRTAP4-9,KRTAP3-1,KRTAP2-4,KRTAP4-8,KRTAP1-4,KRTAP4-7
SE_01_001900627 chr17:41048175-41063858 Sample_01_0019 Brain and spinal cord astrocyte 627 2 527 95 3 91 359 LOC730755,KRTAP2-2,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP2-4,KRTAP1-3,KRTAP3-1,KRTAP3-2,KRTAP4-8,KRTAP4-7,KRTAP1-5
SE_02_113701091 chr17:41049931-41064735 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1091 3 503 90 3 91 359 KRTAP9-7,KRTAP2-3,KRTAP2-2,KRTAP1-5,KRTAP2-1,KRTAP1-1,KRTAP1-3,KRTAP4-9,KRTAP3-1,KRTAP2-4,KRTAP4-8,KRTAP1-4,KRTAP4-7
SE_02_127901041 chr17:41051549-41067884 Sample_02_1279 Bone Mesenchymal stem cells 1041 1 562 105 4 131 540 KRTAP9-7,KRTAP2-4,KRTAP2-3,KRTAP2-2,KRTAP1-5,KRTAP2-1,KRTAP1-1,KRTAP1-3,KRTAP4-9,KRTAP3-1,KRTAP4-8,KRTAP1-4,KRTAP4-7
SE_02_031700398 chr17:41055163-41067990 Sample_02_0317 Neuroblastoma GICAN 398 1 450 87 4 99 398 KRTAP2-4,LOC730755,KRTAP2-2,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP3-1,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_026300680 chr17:41057371-41065643 Sample_02_0263 Osteoblastic hFOB_undifferentiated 680 1 305 63 4 62 271 KRTAP2-4,LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_027401111 chr17:41057798-41068728 Sample_02_0274 Endometriosis hTERT_KD 1111 1 382 76 4 85 356 KRTAP2-4,LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP1-5,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP4-11
SE_01_005600779 chr17:41057880-41064613 Sample_01_0056 Bone osteoblast 779 1 244 54 3 45 175 LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP2-4,KRTAP1-3,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_007400528 chr17:41058024-41068002 Sample_02_0074 Other 90-8TL_PDJQ 528 3 342 74 4 85 356 KRTAP2-4,LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_157100758 chr17:41058107-41064382 Sample_02_1571 Fibroblast Fibroblast cells 758 1 232 52 3 45 175 KRTAP9-7,KRTAP2-3,KRTAP1-5,KRTAP2-2,KRTAP2-1,KRTAP1-1,KRTAP1-3,KRTAP4-9,KRTAP3-1,KRTAP2-4,KRTAP4-8,KRTAP1-4,KRTAP4-7
Genomic distribution of SEs associated with KRTAP1-5
Genome Browser

The strength of the tissue affected by the gene

Expression of KRTAP1-5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)