SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000174943
Gene: KCTD13 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:29905012-29926236 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104601458 chr16:29840292-29895867 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1458 14 1453 80 4 259 3673 CDIPT,CDIPT-AS1,MVP,SEZ6L2,KIF22,PRRT2,MAZ,ASPHD1,KCTD13,PAGR1
SE_02_121300944 chr16:29896763-29923559 Sample_02_1213 Brain GBM31 944 6 651 54 4 184 1723 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_02_120500832 chr16:29896850-29923764 Sample_02_1205 Brain NB3 832 8 661 57 4 180 1697 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_02_125800956 chr16:29897867-29917642 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 956 4 482 30 4 135 1383 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_02_136500169 chr16:29898526-29917186 Sample_02_1365 Pancreas AsPC1-untreated 169 4 457 30 4 131 1313 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_02_081901135 chr16:29898574-29916508 Sample_02_0819 Ovary Mucinous ovarian cancer 1135 3 443 28 3 131 1313 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_02_111100988 chr16:29898595-29917102 Sample_02_1111 Other HGrC1_SMAD2/3KO 988 11 456 30 4 130 1313 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_02_070500622 chr16:29898636-29916846 Sample_02_0705 Pancreas AsPC1 WT 622 3 453 30 4 128 1313 ASPHD1,SEZ6L2,KCTD13,CDIPT,CDIPT-AS1,TMEM219
SE_01_010400982 chr16:29973293-29992979 Sample_01_0104 Lung upper lobe of left lung 982 9 486 36 11 305 2732 HIRIP3,TAOK2,INO80E,FAM57B,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_002700617 chr16:29973632-29981920 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 617 1 188 14 3 115 948 TAOK2,DOC2A,HIRIP3,TMEM219,KCTD13,INO80E,FAM57B,C16ORF92
SE_02_146900769 chr16:29973680-29979605 Sample_02_1469 Umbilical Vein HUVEC 769 1 129 11 3 106 703 TAOK2,INO80E,HIRIP3,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_130901104 chr16:29973742-29978854 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1104 1 108 11 3 80 530 TAOK2,INO80E,HIRIP3,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_095001395 chr16:29973778-29980566 Sample_02_0950 Umbilical vein HUVEC_WT 1395 4 143 11 3 99 740 TAOK2,INO80E,HIRIP3,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_083200514 chr16:29973828-29982033 Sample_02_0832 Umblical vein HUVECs_TNF30min 514 4 181 14 3 107 921 TAOK2,INO80E,HIRIP3,FAM57B,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_058500593 chr16:29973838-29981967 Sample_02_0585 Umbilical vein HUVEC 0hour 593 4 179 14 3 107 906 TAOK2,INO80E,HIRIP3,FAM57B,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_083100464 chr16:29973846-29981716 Sample_02_0831 Umblical vein HUVECs_TNF0min 464 3 168 11 3 100 854 TAOK2,INO80E,HIRIP3,FAM57B,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_062000616 chr16:29973864-29978075 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 616 2 84 9 3 74 365 TAOK2,INO80E,HIRIP3,C16ORF92,KCTD13,DOC2A,TMEM219
SE_02_138300646 chr16:29975638-30007020 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 646 28 862 60 14 363 4447 HIRIP3,DOC2A,INO80E,TAOK2,ALDOA,C16ORF92,FAM57B,KCTD13,TMEM219
SE_02_138100668 chr16:29975898-30006946 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 668 31 858 59 14 362 4425 HIRIP3,DOC2A,INO80E,TAOK2,ALDOA,C16ORF92,FAM57B,KCTD13,TMEM219
SE_02_143201520 chr16:29976036-30007702 Sample_02_1432 Bone A673 STAG2 WT 1520 13 879 65 15 369 4560 HIRIP3,DOC2A,INO80E,TAOK2,ALDOA,C16ORF92,FAM57B,KCTD13,TMEM219
SE_02_140500206 chr16:29976071-30005282 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 206 6 781 54 13 319 4034 HIRIP3,TAOK2,INO80E,ALDOA,C16ORF92,FAM57B,KCTD13,DOC2A,TMEM219
SE_02_104800946 chr16:29976100-30005159 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 946 6 779 54 13 315 3995 HIRIP3,TAOK2,INO80E,ALDOA,C16ORF92,FAM57B,KCTD13,DOC2A,TMEM219
Genomic distribution of SEs associated with KCTD13
Genome Browser

The strength of the tissue affected by the gene

Expression of KCTD13

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)