SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000043143
Gene: JADE2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:134524312-134583230 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_066000278 chr5:134434489-134477549 Sample_02_0660 Mammary gland MCF10DCIS 278 10 1051 64 0 145 0 LOC102546229,JADE2,CDKN2AIPNL,LOC101927934,UBE2B
SE_02_105600606 chr5:134435087-134477689 Sample_02_1056 Esophagus ChTRT 606 4 1042 63 0 145 0 JADE2,CDKN2AIPNL,LOC101927934,LOC102546229
SE_02_050300261 chr5:134448792-134485516 Sample_02_0503 Esophagus KYSE140_1 261 11 950 56 0 85 0 JADE2,CDKN2AIPNL,LOC101927934,LOC102546229
SE_02_051500263 chr5:134448792-134485516 Sample_02_0515 Esophagus KYSE140 263 12 950 56 0 85 0 JADE2,CDKN2AIPNL,LOC101927934,LOC102546229
SE_02_050500662 chr5:134449317-134485372 Sample_02_0505 Esophagus KYSE70_1 662 15 936 51 0 72 0 JADE2,CDKN2AIPNL,LOC101927934,LOC102546229
SE_02_051600656 chr5:134449317-134485372 Sample_02_0516 Esophagus KYSE70 656 15 936 51 0 72 0 JADE2,CDKN2AIPNL,LOC101927934,LOC102546229
SE_02_058400347 chr5:134464123-134485383 Sample_02_0584 Lung H1299 WT 347 5 574 35 0 40 0 LOC101927934,JADE2,LOC102546229,SAR1B,CDKN2AIPNL
SE_02_154100710 chr5:134465154-134485370 Sample_02_1541 Nasopharyngeal HNE1 710 11 557 35 0 33 0 LOC101927934,JADE2,LOC102546229
SE_02_113100752 chr5:134465479-134485203 Sample_02_1131 Pancreas T3M4 wt 752 9 543 35 0 33 0 LOC101927934,JADE2,LOC102546229
SE_02_133800358 chr5:134465524-134485489 Sample_02_1338 Esophagus KYSE180 358 7 553 35 0 33 0 LOC101927934,JADE2,LOC102546229
SE_02_143400901 chr5:134465585-134485507 Sample_02_1434 Trophoblast trophoblast stem cells 901 3 553 35 0 33 0 LOC101927934,JADE2,LOC102546229
SE_02_104801858 chr5:134489771-134516123 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1858 5 681 56 8 70 389 LOC101927934,JADE2
SE_02_077101286 chr5:134501326-134513052 Sample_02_0771 Ovary OVCA429_shGRHL2 1286 9 284 29 6 47 343 LOC101927934,JADE2
SE_02_057000497 chr5:134501547-134512055 Sample_02_0570 Brain LN229_10_mM_glucose 497 6 257 21 5 46 343 LOC101927934,JADE2
SE_02_133500120 chr5:134501815-134512891 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 120 4 268 25 5 46 343 LOC101927934,JADE2
SE_02_057100780 chr5:134501934-134512718 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 780 7 264 23 5 44 343 LOC101927934,JADE2
SE_02_066100077 chr5:134501964-134512991 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 77 4 270 26 5 44 343 LOC101927934,JADE2
SE_04_000300266 chr5:134502116-134512720 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 266 5 260 23 5 44 343 LOC101927934,JADE2
SE_02_047500594 chr5:134502166-134512970 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 594 2 264 26 5 44 343 LOC101927934,JADE2
SE_02_122800627 chr5:134502179-134512858 Sample_02_1228 Mammary gland MDA-MB-231_2 627 6 261 25 5 44 343 LOC101927934,JADE2
SE_02_113100783 chr5:134502181-134512790 Sample_02_1131 Pancreas T3M4 wt 783 6 260 24 5 44 343 LOC101927934,JADE2
SE_02_111500962 chr5:134502272-134512561 Sample_02_1115 Liver HepG2 962 4 252 22 5 44 343 LOC101927934,JADE2
SE_02_055900224 chr5:134502476-134512930 Sample_02_0559 iPSCs FX52 iPSCs dC-T 224 3 254 25 5 44 343 LOC101927934,JADE2
SE_02_071700695 chr5:134502572-134512776 Sample_02_0717 Pancreas HPAFII_GFP_DOX 695 3 251 23 4 44 343 LOC101927934,JADE2
SE_02_133400415 chr5:134502709-134512896 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 415 3 249 24 4 44 343 LOC101927934,JADE2
SE_02_126900838 chr5:134502788-134513022 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 838 3 251 26 4 44 343 LOC101927934,JADE2
SE_02_154900763 chr5:134502811-134512807 Sample_02_1549 Gastrointestinal Stromal GIST-430B 763 3 246 23 4 44 343 LOC101927934,JADE2
SE_02_133700153 chr5:134502847-134512826 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 153 5 246 23 4 44 343 LOC101927934,JADE2
SE_02_152400388 chr5:134502857-134513190 Sample_02_1524 Lung H3122 DMSO 388 4 252 26 4 44 343 LOC101927934,JADE2
SE_02_126801102 chr5:134502869-134511876 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1102 3 227 20 4 44 343 LOC101927934,JADE2
SE_02_053000613 chr5:134502876-134513094 Sample_02_0530 Mammary gland MCF10A 613 2 251 26 4 44 343 LOC101927934,JADE2
SE_02_047600842 chr5:134502917-134512860 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 842 4 246 24 4 44 343 LOC101927934,JADE2
SE_02_094200293 chr5:134502937-134512033 Sample_02_0942 Brain LN229 293 6 230 20 4 44 343 LOC101927934,JADE2
SE_02_055800288 chr5:134502938-134512950 Sample_02_0558 iPSCs FX52 iPSCs mock 288 3 247 24 4 44 343 LOC101927934,JADE2
SE_02_072600124 chr5:134502974-134512864 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 124 6 245 24 4 44 343 LOC101927934,JADE2
SE_02_151400797 chr5:134502994-134512781 Sample_02_1514 Lung Differentiated AT1-like cells 797 2 243 22 4 44 343 LOC101927934,JADE2
SE_02_056000240 chr5:134502996-134512935 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 240 4 245 23 4 44 343 LOC101927934,JADE2
SE_02_078500364 chr5:134503052-134510069 Sample_02_0785 Brain 2097 364 3 191 17 3 32 343 LOC101927934,JADE2
SE_02_072500255 chr5:134503052-134512858 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 255 7 243 23 4 43 343 LOC101927934,JADE2
SE_02_067700417 chr5:134503372-134512859 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 417 4 240 23 4 41 343 LOC101927934,JADE2
SE_02_052500377 chr5:134503432-134513409 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 377 4 253 27 4 39 343 LOC101927934,JADE2
SE_02_052400406 chr5:134503445-134513408 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 406 4 250 27 4 39 343 LOC101927934,JADE2
Genomic distribution of SEs associated with JADE2
Genome Browser

The strength of the tissue affected by the gene

Expression of JADE2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)