SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000096433
Gene: ITPR3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:33620365-33696574 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103601641 chr6:33521618-33576647 Sample_02_1036 Mammary gland HCC70_XY018 1641 23 1738 387 17 61 704 BAK1,GGNBP1,ITPR3,LINC00336
SE_02_151000477 chr6:33531859-33591866 Sample_02_1510 Lung H3122_LR_Pano 477 16 1839 371 15 87 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_093000844 chr6:33543706-33591777 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 844 19 1401 308 14 79 2007 LINC00336,GGNBP1,BAK1,ITPR3,IP6K3
SE_02_045500429 chr6:33547934-33590886 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 429 11 1240 276 13 79 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_065200589 chr6:33549117-33591588 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 589 16 1223 266 13 79 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_064800711 chr6:33549479-33591356 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 711 12 1210 259 13 79 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_064900532 chr6:33552749-33591328 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 532 9 1089 211 13 79 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_048000828 chr6:33557130-33591718 Sample_02_0480 Gingival epithelial HGEP 828 9 954 162 13 75 2007 LINC00336,GGNBP1,BAK1,ITPR3,ZBTB22,DAXX,CUTA,PHF1,LEMD2
SE_02_112000312 chr6:33557168-33591781 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 312 10 955 162 13 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_125400749 chr6:33561077-33591682 Sample_02_1254 Bladder Bladder tumor Basal1 749 5 826 129 13 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_122700737 chr6:33561450-33590932 Sample_02_1227 Bone marrow U266 737 9 797 124 13 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_104800545 chr6:33562725-33590047 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 545 13 750 117 13 63 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_115700321 chr6:33569311-33590960 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 321 9 591 80 12 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_104200534 chr6:33569678-33585766 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 534 9 425 55 10 44 1498 GGNBP1,BAK1,ITPR3,LINC00336
SE_02_104500537 chr6:33569680-33586071 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 537 9 438 57 10 47 1572 GGNBP1,BAK1,ITPR3,LINC00336
SE_00_000500564 chr6:33569776-33572703 Sample_00_0005 Blood B-cell 564 1 63 8 2 6 68 BAK1,GGNBP1,ITPR3,C6ORF227
SE_02_002600468 chr6:33569789-33586014 Sample_02_0026 Blood CD4donorE 468 4 430 56 10 47 1561 BAK1,GGNBP1,ITPR3,C6ORF227
SE_02_104400244 chr6:33569962-33590357 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 244 5 549 75 12 65 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_115600297 chr6:33570019-33591036 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 297 8 567 78 12 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_059100375 chr6:33570047-33586037 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 375 7 424 54 9 47 1565 GGNBP1,BAK1,ITPR3,LINC00336,SYNGAP1,CUTA,UQCC2
SE_02_139300587 chr6:33570122-33590760 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 587 4 552 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_014800504 chr6:33570142-33580294 Sample_02_0148 Blood CD8_T_cells 504 2 266 30 7 42 1000 BAK1,GGNBP1,ITPR3,C6ORF227
SE_02_059200268 chr6:33570178-33580641 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 268 3 275 33 9 42 1049 BAK1,GGNBP1,ITPR3,LINC00336
SE_02_122400941 chr6:33570183-33591859 Sample_02_1224 Bone marrow normal plasma cell 941 8 578 76 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_059300514 chr6:33570210-33580667 Sample_02_0593 Fetal spleenocytes fetal naive T cells 514 3 275 33 9 42 1049 BAK1,GGNBP1,ITPR3,LINC00336
SE_00_004700430 chr6:33570270-33585852 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 430 5 412 52 9 47 1521 GGNBP1,BAK1,ITPR3,LINC00336
SE_02_081601892 chr6:33570433-33591350 Sample_02_0816 Ovary Clear cell ovarian cancer 1892 5 565 76 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_01_010900915 chr6:33570570-33591741 Sample_01_0109 Colon transverse colon_54y 915 3 568 75 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3,PHF1
SE_02_024100371 chr6:33570583-33591922 Sample_02_0241 Colon V456 371 3 570 75 11 75 2007 BAK1,C6ORF227,GGNBP1,ITPR3
SE_02_064500882 chr6:33570692-33591778 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 882 3 564 75 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_034500318 chr6:33570719-33586064 Sample_02_0345 Blood AML8 318 3 406 51 9 47 1569 BAK1,GGNBP1,ITPR3,C6ORF227
SE_02_135200633 chr6:33570754-33591914 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 633 3 566 74 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_047800705 chr6:33570792-33591792 Sample_02_0478 Colon normal colon mucosa 705 4 561 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3,PHF1
SE_00_005600663 chr6:33570843-33591472 Sample_00_0056 Sigmoid colon sigmoid colon 3y 663 4 555 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_135400592 chr6:33570873-33592034 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 592 3 569 74 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_135300559 chr6:33570874-33591789 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 559 3 561 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_065000586 chr6:33570902-33591602 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 586 3 557 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_133400305 chr6:33570903-33591141 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 305 4 548 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_133300240 chr6:33570931-33591297 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 240 4 553 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_064600475 chr6:33570940-33591658 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 475 3 558 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_01_009900479 chr6:33570965-33591282 Sample_01_0099 Colon transverse colon 479 5 553 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3,PHF1
SE_02_105100621 chr6:33570996-33591799 Sample_02_1051 Esophagus Eso26 621 3 560 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_104000460 chr6:33571004-33585772 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 460 7 390 48 9 44 1500 GGNBP1,BAK1,ITPR3,LINC00336
SE_02_064701010 chr6:33571019-33591769 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1010 4 559 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_064400507 chr6:33571067-33591262 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 507 5 550 73 11 75 2007 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_104901322 chr6:33574902-33580912 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1322 1 177 19 4 16 555 BAK1,GGNBP1,ITPR3,LINC00336
SE_01_007900709 chr6:33576419-33581322 Sample_01_0079 Peyers patch Peyers-patch 709 1 145 20 3 7 345 BAK1,GGNBP1,ITPR3,C6ORF227
SE_00_003500713 chr6:33576587-33580759 Sample_00_0035 Sigmoid colon sigmoid-colon 713 1 121 16 3 7 345 BAK1,GGNBP1,ITPR3,C6ORF227
SE_02_039601754 chr6:33576675-33580875 Sample_02_0396 Skin NHEK-D 1754 1 122 16 3 7 345 BAK1,GGNBP1,ITPR3,C6ORF227
SE_02_083101152 chr6:33576744-33591617 Sample_02_0831 Umblical vein HUVECs_TNF0min 1152 6 412 57 5 40 1303 LINC00336,GGNBP1,BAK1,ITPR3
SE_00_004900474 chr6:33577389-33580975 Sample_00_0049 Small intestine small intestine 30y 474 1 107 16 3 5 324 BAK1,GGNBP1,ITPR3,LINC00336
SE_02_032300187 chr6:33583171-33595990 Sample_02_0323 Colon RKO 187 1 354 50 4 33 1127 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_004700778 chr6:33585062-33594407 Sample_02_0047 Pancreatic endoderm IIDP/donor790 778 1 255 35 3 32 820 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_006800216 chr6:33585162-33619658 Sample_02_0068 Skin A375_DMSO 216 10 1039 200 15 50 812 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_132200664 chr6:33585287-33614604 Sample_02_1322 Connective Tissue HT1080_WT 664 7 911 175 14 50 781 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_114300091 chr6:33585715-33613544 Sample_02_1143 Peripheral nerve MPNST724_PRC2 WT 91 6 870 169 13 44 686 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_103000415 chr6:33586129-33593759 Sample_02_1030 Colon DKO 415 1 213 29 2 28 590 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_087300395 chr6:33586689-33601640 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 395 5 458 90 5 31 485 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_003200611 chr6:33587677-33594104 Sample_02_0032 Pancreas pancreatic-islets-M 611 1 178 26 2 26 330 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_099000617 chr6:33588567-33614834 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 617 6 816 163 13 44 278 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_027000377 chr6:33588624-33614266 Sample_02_0270 Kidney PCS-400 377 6 801 159 13 44 278 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_026900182 chr6:33588826-33614911 Sample_02_0269 Kidney HK-2 182 5 811 165 13 44 244 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_153700237 chr6:33588933-33620821 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 237 8 956 192 16 56 222 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_153600686 chr6:33589277-33614375 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 686 7 785 157 13 37 169 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_114900510 chr6:33589902-33615192 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 510 5 791 160 13 30 169 LINC00336,GGNBP1,BAK1,ITPR3
Genomic distribution of SEs associated with ITPR3
Genome Browser

The strength of the tissue affected by the gene

Expression of ITPR3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)