SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000216588
Gene: IGSF23 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:44613563-44636781 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153400644 chr19:44574537-44589916 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 644 3 482 32 0 0 0 CEACAM20,CEACAM22P,IGSF23
SE_02_144900366 chr19:44574576-44609113 Sample_02_1449 Adipose SW872_YAP_TFE3 366 9 1023 97 2 0 0 MIR4531,CEACAM22P,CEACAM20,IGSF23,PVR
SE_02_071300678 chr19:44574882-44608398 Sample_02_0713 Pancreas BxPC3_sgTP63 678 10 1008 97 2 0 0 MIR4531,CEACAM22P,CEACAM20,IGSF23,PVR
SE_02_135100912 chr19:44574926-44608067 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 912 6 997 97 2 0 0 MIR4531,CEACAM22P,CEACAM20,IGSF23,PVR
SE_02_135300993 chr19:44574977-44607726 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 993 8 982 97 2 0 0 MIR4531,CEACAM22P,CEACAM20,IGSF23,PVR
SE_02_099000153 chr19:44575557-44607508 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 153 6 956 92 2 0 0 MIR4531,CEACAM22P,CEACAM20,IGSF23,PVR
SE_02_048101232 chr19:44584152-44609255 Sample_02_0481 Mammary gland MDA-MB231 1232 6 703 70 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_127100600 chr19:44585047-44608123 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 600 9 657 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_126401292 chr19:44585054-44590093 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1292 1 135 4 0 0 0 IGSF23,CEACAM22P
SE_02_138600212 chr19:44585231-44607377 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 212 7 631 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_154900512 chr19:44585286-44609295 Sample_02_1549 Gastrointestinal Stromal GIST-430B 512 10 671 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_046100682 chr19:44585335-44593207 Sample_02_0461 Blood MV-4-11-B cells 682 5 224 15 0 0 0 IGSF23,CEACAM22P
SE_02_126301005 chr19:44585643-44608356 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1005 5 646 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_113700959 chr19:44585733-44609418 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 959 7 663 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_153800541 chr19:44585863-44607866 Sample_02_1538 Mammary gland MDA-MB-231 541 4 624 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_061001449 chr19:44585894-44609393 Sample_02_0610 Liposarcoma MLS 1765-92 1449 6 656 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_126701313 chr19:44585921-44604000 Sample_02_1267 Bone Im-GCT-4072_G34W 1313 5 511 61 1 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_102100368 chr19:44586024-44608485 Sample_02_1021 Mammary gland SUM159R 368 7 636 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_132800779 chr19:44586078-44608031 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 779 10 627 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_088301202 chr19:44586110-44608078 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1202 6 629 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_139000318 chr19:44586126-44589729 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 318 2 98 4 0 0 0 IGSF23,CEACAM22P
SE_02_087901410 chr19:44586159-44609036 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1410 6 642 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_099100448 chr19:44586213-44606951 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 448 3 598 65 1 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_099200422 chr19:44586226-44593384 Sample_02_0992 Mammary gland MDA-MB-231_Par 422 2 207 16 0 0 0 IGSF23,CEACAM22P
SE_02_087801586 chr19:44586262-44609092 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1586 5 640 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_158300813 chr19:44586324-44609559 Sample_02_1583 Fetal lung IMR90_empty_GM 813 11 654 69 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_058500441 chr19:44586334-44609948 Sample_02_0585 Umbilical vein HUVEC 0hour 441 15 670 73 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_156900716 chr19:44586422-44609589 Sample_02_1569 Endothelial Endothelial cells 716 4 651 68 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_094900825 chr19:44586480-44610283 Sample_02_0949 Umbilical artery HUAEC_WT 825 17 675 72 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_071000774 chr19:44586557-44599472 Sample_02_0710 Pancreas hN34_organoid 774 10 370 42 0 0 0 CEACAM22P,IGSF23,PVR
SE_02_083101026 chr19:44586719-44609616 Sample_02_0831 Umblical vein HUVECs_TNF0min 1026 16 642 68 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_054700455 chr19:44586758-44592511 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 455 4 155 7 0 0 0 IGSF23,CEACAM22P
SE_02_082200065 chr19:44586998-44594301 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 65 1 206 18 0 0 0 CEACAM22P,IGSF23,PVR
SE_02_108400498 chr19:44587002-44609192 Sample_02_1084 Blood KBM7-derived near haploid cells 498 12 624 68 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_071100937 chr19:44587004-44597544 Sample_02_0711 Pancreas hN35_organoid 937 4 295 32 0 0 0 CEACAM22P,IGSF23,PVR
SE_02_082300100 chr19:44587089-44594247 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 100 1 202 18 0 0 0 CEACAM22P,IGSF23,PVR
SE_02_093001350 chr19:44587158-44608426 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1350 16 608 68 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_062000420 chr19:44587353-44609329 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 420 8 621 68 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_128400084 chr19:44590329-44609369 Sample_02_1284 Lung NCI-H211_p8-15 84 8 540 65 2 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_147101192 chr19:44601285-44607201 Sample_02_1471 Blood Outgrowth Endothelia BOEC 1192 1 181 15 1 0 0 MIR4531,CEACAM22P,IGSF23,PVR
SE_02_147000815 chr19:44648026-44695908 Sample_02_1470 Umbilical Vein H441 815 9 1367 115 3 34 2333 MIR4531,PVR,CEACAM19,IGSF23,CEACAM16
Genomic distribution of SEs associated with IGSF23
Genome Browser

The strength of the tissue affected by the gene

Expression of IGSF23

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)