SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000249853
Gene: HS3ST5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:114055586-114343045 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_011500680 chr6:113982402-114018506 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 680 8 934 17 2 58 220 LOC101927768,HDAC2,HS3ST5
SE_02_081100498 chr6:113989387-114019868 Sample_02_0811 Thyroid BCPAP 498 12 803 15 1 50 220 LOC101927768,HDAC2,HS3ST5
SE_02_139800796 chr6:113993679-114019306 Sample_02_1398 Bone U2OS_siNC 796 8 677 10 1 48 76 LOC101927768,HDAC2,HS3ST5
SE_02_032400132 chr6:113993689-114023618 Sample_02_0324 Colon SW48 132 2 793 10 1 56 76 HS3ST5,HDAC2
SE_02_127100480 chr6:113993922-114018543 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 480 10 643 10 1 48 76 LOC101927768,HDAC2,HS3ST5
SE_02_031700228 chr6:113994229-114035668 Sample_02_0317 Neuroblastoma GICAN 228 7 1077 12 1 72 76 HS3ST5,HDAC2
SE_02_012400557 chr6:113994753-114019469 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 557 4 645 9 1 45 76 HS3ST5,HDAC2
SE_02_015000311 chr6:113994799-114019236 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 311 2 639 9 1 45 76 HS3ST5,HDAC2
SE_02_102500881 chr6:113994930-114020763 Sample_02_1025 Esophagus KYSE150 881 9 687 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_061000606 chr6:113994997-114019303 Sample_02_0610 Liposarcoma MLS 1765-92 606 7 637 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_113701181 chr6:113995044-114018622 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1181 4 613 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_044000243 chr6:113995060-114018490 Sample_02_0440 Bone LM7 243 13 612 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_074100664 chr6:113995062-114019390 Sample_02_0741 Muscle RH30 664 8 635 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_032200784 chr6:113995064-114050762 Sample_02_0322 Colon Caco-2 784 7 1390 12 1 109 76 HS3ST5,HDAC2
SE_02_125900918 chr6:113995088-114017868 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 918 5 593 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_126000778 chr6:113995091-114017860 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 778 7 592 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_048100982 chr6:113995092-114025813 Sample_02_0481 Mammary gland MDA-MB231 982 11 794 9 1 53 76 LOC101927768,HDAC2,HS3ST5
SE_02_042000478 chr6:113995093-114018708 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 478 9 613 9 1 45 76 HS3ST5,HDAC2
SE_02_126100764 chr6:113995101-114018573 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 764 10 610 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_041900768 chr6:113995110-114019184 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 768 16 624 9 1 45 76 HS3ST5,HDAC2
SE_02_071301205 chr6:113995113-114025545 Sample_02_0713 Pancreas BxPC3_sgTP63 1205 11 787 9 1 53 76 LOC101927768,HDAC2,HS3ST5
SE_02_105200405 chr6:113995117-114018524 Sample_02_1052 Esophagus JH-EsoAd1 405 9 609 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_132300176 chr6:113995130-114018758 Sample_02_1323 Colon DLD1_WT 176 3 612 9 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_099200361 chr6:113995159-114018889 Sample_02_0992 Mammary gland MDA-MB-231_Par 361 9 616 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_044100760 chr6:113995173-114016730 Sample_02_0441 Bone M112 760 10 553 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_143400475 chr6:113995176-114018522 Sample_02_1434 Trophoblast trophoblast stem cells 475 2 607 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_144900350 chr6:113995186-114025602 Sample_02_1449 Adipose SW872_YAP_TFE3 350 6 786 8 1 53 76 LOC101927768,HDAC2,HS3ST5
SE_02_077001245 chr6:113995197-114019534 Sample_02_0770 Ovary OVCA429_shLuc 1245 15 630 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_076900656 chr6:113995208-114019632 Sample_02_0769 Ovary HEYA8 656 15 633 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_135200935 chr6:113995210-114019057 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 935 8 616 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_084600743 chr6:113995262-114024822 Sample_02_0846 Mammary gland MDA-MB-231_untreat 743 13 765 8 1 53 76 LOC101927768,HDAC2,HS3ST5
SE_02_143500400 chr6:113995290-114017936 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 400 3 587 8 1 45 76 LOC101927768,HDAC2,HS3ST5
SE_02_037000661 chr6:113995497-114019568 Sample_02_0370 Skeletal muscle RH4 661 5 624 8 1 45 69 HS3ST5,HDAC2
SE_02_075300907 chr6:113995572-114016288 Sample_02_0753 Embryo ES-derived progenitors_FG type 907 5 530 8 1 45 63 LOC101927768,HDAC2,HS3ST5
SE_02_019600073 chr6:113995577-114018266 Sample_02_0196 Stomach NCC59 73 5 592 8 1 45 63 HS3ST5,HDAC2
SE_02_099000467 chr6:113995810-114019175 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 467 7 609 8 1 45 46 LOC101927768,HDAC2,HS3ST5
SE_02_152700297 chr6:113995892-114017946 Sample_02_1527 Embryo naive embryonic stem cell 297 9 576 8 1 45 36 LOC101927768,HDAC2,HS3ST5
SE_02_099100917 chr6:113996005-114018720 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 917 5 592 8 1 45 19 LOC101927768,HDAC2,HS3ST5
SE_02_019700109 chr6:113996125-114018220 Sample_02_0197 Stomach SNU1750 109 6 583 8 1 43 11 HS3ST5,HDAC2
Genomic distribution of SEs associated with HS3ST5
Genome Browser

The strength of the tissue affected by the gene

Expression of HS3ST5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)