SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000196196
Gene: HRCT1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr9:35906202-35907136 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602468 chr9:35833650-35868124 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2468 10 911 74 7 168 2170 TMEM8B,LINC00950,NPR2,HINT2,SPAG8,OR13J1,LINC00961,FAM221B,HRCT1
SE_02_112500421 chr9:35907240-35915917 Sample_02_1125 Adipose visceral adipose_CS_VC06 421 3 250 23 1 37 431 LINC00961,LINC00950,OR2S2,OR13J1,HRCT1
SE_02_058800175 chr9:35911142-35962640 Sample_02_0588 Cervix HeLa Kyoto_untreated 175 13 1435 187 2 82 282 OR2S2,LINC00961,OR13J1,HRCT1
SE_02_132800153 chr9:35911228-35954902 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 153 15 1207 169 2 53 71 LINC00961,OR13J1,OR2S2,HRCT1
SE_02_137801288 chr9:35911427-35962626 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1288 15 1430 187 2 74 258 OR2S2,LINC00961,OR13J1,HRCT1
SE_02_098801046 chr9:35913400-35925462 Sample_02_0988 Blood K562_EPZ 1046 9 313 31 0 6 0 LINC00961,OR13J1,OR2S2,HRCT1
SE_02_059000188 chr9:35913520-35953044 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 188 17 1094 163 2 40 0 LINC00961,OR13J1,OR2S2,HRCT1
SE_02_058900153 chr9:35913570-35953052 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 153 14 1094 163 2 40 0 LINC00961,OR13J1,OR2S2,HRCT1
SE_02_049800306 chr9:35913631-35962282 Sample_02_0498 Fetal lung IMR90 Senescent_1 306 14 1367 183 2 70 201 OR2S2,LINC00961,OR13J1,HRCT1,RECK,NPR2
SE_02_132700231 chr9:35917329-35937066 Sample_02_1327 Hindbrain Hindbrain derived neural stem cells_NS13_H3.3K27M_WT 231 6 516 67 1 30 0 LINC00961,OR13J1,OR2S2,HRCT1
SE_02_057100408 chr9:35920136-35945651 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 408 13 702 96 2 37 0 LINC00961,OR13J1,OR2S2,HRCT1
SE_02_057200395 chr9:35922342-35945820 Sample_02_0572 Brain LN229_1_mM_glucose 395 7 653 88 2 34 0 LINC00961,OR2S2,HRCT1
SE_02_063800325 chr9:35922501-35962579 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 325 15 1137 159 2 64 201 OR2S2,LINC00961,HRCT1
SE_02_157100374 chr9:35922557-35937775 Sample_02_1571 Fibroblast Fibroblast cells 374 6 389 55 2 26 0 LINC00961,OR2S2,HRCT1
SE_02_094200217 chr9:35922570-35937448 Sample_02_0942 Brain LN229 217 4 376 51 1 26 0 LINC00961,OR2S2,HRCT1
SE_02_057000422 chr9:35922672-35945770 Sample_02_0570 Brain LN229_10_mM_glucose 422 8 639 88 2 34 0 LINC00961,OR2S2,HRCT1
SE_02_060600965 chr9:35922706-35962711 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 965 11 1134 160 2 64 201 OR2S2,LINC00961,HRCT1
SE_01_005600910 chr9:35922848-35961108 Sample_01_0056 Bone osteoblast 910 6 1082 152 2 64 201 OR2S2,HRCT1,LOC158376
SE_02_135501123 chr9:35922994-35938024 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1123 3 391 55 2 26 0 LINC00961,OR2S2,HRCT1
SE_02_113300619 chr9:35922994-35962682 Sample_02_1133 Liver Hepatic stellate cells 619 6 1125 157 2 64 201 OR2S2,LINC00961,HRCT1
SE_02_061001380 chr9:35923039-35962387 Sample_02_0610 Liposarcoma MLS 1765-92 1380 10 1118 157 2 64 201 OR2S2,LINC00961,HRCT1
SE_02_137900884 chr9:35923075-35945735 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 884 8 625 86 2 34 0 LINC00961,OR2S2,HRCT1
SE_02_049901511 chr9:35923240-35972434 Sample_02_0499 Fetal lung IMR90 IR Senescence 1511 10 1404 213 4 64 201 OR2S2,LINC00961,HRCT1,RECK,NPR2
SE_02_132400113 chr9:35923327-35937021 Sample_02_1324 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M 113 3 342 48 1 26 0 LINC00961,OR2S2,HRCT1
SE_02_151400547 chr9:35923482-35952314 Sample_02_1514 Lung Differentiated AT1-like cells 547 8 812 134 2 34 0 LINC00961,OR2S2,HRCT1
Genomic distribution of SEs associated with HRCT1
Genome Browser

The strength of the tissue affected by the gene

Expression of HRCT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)