SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000226790
Gene: HNRNPA3P1 Gene type: processed_pseudogene
Strand: - External links:
Genomic region: chr10:43789249-43790387 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_061400373 chr10:43791583-43845634 Sample_02_0614 Liposarcoma MLPS_T2 373 14 1592 130 8 106 98 LINC00619,LINC00840,HNRNPA3P1
SE_01_004400770 chr10:43799044-43818194 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 770 2 540 25 4 54 0 C10ORF136,HNRNPA3P1
SE_02_127100426 chr10:43801738-43824915 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 426 9 659 47 6 56 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_030100090 chr10:43804625-43902069 Sample_02_0301 Neuroblastoma GIMEN 90 7 2842 272 11 229 679 C10ORF136,HNRNPA3P1,LOC283033
SE_02_007400395 chr10:43805724-43821336 Sample_02_0074 Other 90-8TL_PDJQ 395 4 447 32 5 36 0 C10ORF136,HNRNPA3P1
SE_02_104601651 chr10:43807323-43885683 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1651 19 2320 243 11 198 566 LINC00840,LINC00619,HNRNPA3P1,LINC00841,ZNF32
SE_02_060500818 chr10:43807950-43825958 Sample_02_0605 Skin Skin Fibroblast_DMSO 818 7 524 46 7 53 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_060600831 chr10:43808001-43825922 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 831 7 517 46 7 53 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_127200174 chr10:43808043-43823318 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 174 17 452 39 6 37 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_091501068 chr10:43808894-43829038 Sample_02_0915 Heart left ventricle_DCM_LV1371 1068 10 560 54 7 55 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_063801125 chr10:43809007-43824195 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 1125 15 437 37 5 44 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_090801437 chr10:43809369-43828415 Sample_02_0908 Heart left ventricle_DCM_LV1262 1437 10 543 54 7 52 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_090901025 chr10:43809411-43828526 Sample_02_0909 Heart left ventricle_DCM_LV1264 1025 11 542 54 7 52 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_091801166 chr10:43809456-43827476 Sample_02_0918 Heart left ventricle_DCM_LV1437 1166 6 523 54 7 49 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_128400162 chr10:43810766-43823710 Sample_02_1284 Lung NCI-H211_p8-15 162 7 387 35 5 28 0 LINC00619,LINC00840,HNRNPA3P1
SE_02_028000084 chr10:43822962-43893112 Sample_02_0280 Mammary gland SUM159_DMSO_24h 84 9 2056 209 5 181 566 C10ORF136,HNRNPA3P1,LOC283033
Genomic distribution of SEs associated with HNRNPA3P1
Genome Browser

The strength of the tissue affected by the gene

Expression of HNRNPA3P1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)