Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000164104 |
| Gene: | HMGB2 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr4:173331376-173334432 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_143301432 | chr4:173204980-173307724 |
Sample_02_1433 | Bone | A673 STAG2 null | 1432 | 36 | 2612 | 136 | 9 | 221 | 365 | MIR548T,GALNT7,HMGB2 |
| SE_02_059400730 | chr4:173209096-173302270 |
Sample_02_0594 | iPSC-derived | neural progenitors | 730 | 19 | 2394 | 120 | 7 | 209 | 319 | MIR548T,GALNT7,HMGB2,SAP30 |
| SE_02_099900161 | chr4:173212107-173288986 |
Sample_02_0999 | Lymphoma | OCI-LY1_966 | 161 | 30 | 1962 | 94 | 6 | 131 | 107 | MIR548T,GALNT7,HMGB2 |
| SE_02_045900462 | chr4:173217367-173291481 |
Sample_02_0459 | Blood | ME-1_DMSO_6h | 462 | 33 | 1905 | 95 | 5 | 123 | 107 | MIR548T,GALNT7,HMGB2 |
| SE_02_003400344 | chr4:173231198-173289803 |
Sample_02_0034 | Peripheral blood | CUTLL1_GSI | 344 | 20 | 1504 | 71 | 3 | 116 | 107 | GALNT7,HMGB2 |
| SE_00_004500250 | chr4:173231369-173290235 |
Sample_00_0045 | Thymus | thymus | 250 | 11 | 1508 | 72 | 3 | 116 | 107 | GALNT7,HMGB2,SAP30 |
| SE_02_105300195 | chr4:173257592-173302188 |
Sample_02_1053 | Esophagus | OACM5.1 | 195 | 17 | 1154 | 62 | 0 | 104 | 206 | MIR548T,GALNT7,HMGB2 |
| SE_02_049401351 | chr4:173288435-173301651 |
Sample_02_0494 | Islets | differentiated hESCs Late pancreatic progenitor cells | 1351 | 2 | 334 | 23 | 0 | 56 | 169 | GALNT7,HMGB2,MIR548T |
| SE_02_108300960 | chr4:173357031-173375991 |
Sample_02_1083 | Macula | macula | 960 | 5 | 440 | 5 | 0 | 30 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_155401009 | chr4:173360835-173374666 |
Sample_02_1554 | Gastrointestinal Stromal | GIST-3_KIT e11 | 1009 | 4 | 322 | 3 | 0 | 27 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_156001061 | chr4:173360878-173374683 |
Sample_02_1560 | Gastrointestinal Stromal | GIST-9_PDGFRA e18 | 1061 | 5 | 319 | 3 | 0 | 27 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_120200714 | chr4:173367853-173374652 |
Sample_02_1202 | Brain | GBM38 | 714 | 3 | 184 | 3 | 0 | 22 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_105300107 | chr4:173367866-173428767 |
Sample_02_1053 | Esophagus | OACM5.1 | 107 | 22 | 1531 | 62 | 0 | 95 | 709 | SAP30,SCRG1,HMGB2 |
| SE_02_117401090 | chr4:173367947-173374503 |
Sample_02_1174 | Brain | GBM02 | 1090 | 3 | 173 | 3 | 0 | 22 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_119700642 | chr4:173367995-173374561 |
Sample_02_1197 | Brain | GBM33 | 642 | 4 | 174 | 3 | 0 | 22 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_119800873 | chr4:173368106-173374441 |
Sample_02_1198 | Brain | GBM34 | 873 | 4 | 167 | 3 | 0 | 22 | 270 | SAP30,HMGB2,SCRG1 |
| SE_02_118100504 | chr4:173369167-173417231 |
Sample_02_1181 | Brain | GBM10 | 504 | 8 | 1230 | 50 | 0 | 95 | 709 | SAP30,SCRG1,HMGB2 |
| SE_02_119301349 | chr4:173369272-173381803 |
Sample_02_1193 | Brain | GBM27 | 1349 | 3 | 320 | 7 | 0 | 44 | 299 | SAP30,HMGB2,SCRG1 |
Genomic distribution of SEs associated with HMGB2