SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000135077
Gene: HAVCR2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:157085832-157142869 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077501296 chr5:157012396-157065909 Sample_02_0775 Pancreas EndoC-BH1_SE 1296 14 1615 197 6 42 574 HAVCR1,HAVCR2,TIMD4
SE_03_001000198 chr5:157019847-157074243 Sample_03_0010 Lung A549_dexamethasone_1h 198 6 1587 163 6 45 574 HAVCR1,HAVCR2
SE_02_078100747 chr5:157020552-157080971 Sample_02_0781 Lymphoma Pfeiffer_DMSO 747 22 1749 180 8 50 574 HAVCR1,HAVCR2
SE_02_080800169 chr5:157023024-157077055 Sample_02_0808 Ovary RMG1_ARID1A KO 169 33 1561 160 6 45 574 HAVCR1,HAVCR2
SE_02_008000079 chr5:157026701-157075387 Sample_02_0080 Lung Calu-3 79 13 1422 151 5 40 574 HAVCR1,HAVCR2
SE_02_075300054 chr5:157027002-157066947 Sample_02_0753 Embryo ES-derived progenitors_FG type 54 9 1176 133 5 35 574 HAVCR1,HAVCR2
SE_02_075600077 chr5:157027319-157067818 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 77 11 1187 135 5 35 574 HAVCR1,HAVCR2
SE_02_047600088 chr5:157027385-157070674 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 88 18 1263 140 5 36 574 HAVCR1,HAVCR2
SE_02_075700030 chr5:157027438-157066342 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 30 12 1149 128 5 35 574 HAVCR1,HAVCR2
SE_03_000800167 chr5:157028621-157074622 Sample_03_0008 Lung A549_dexamethasone_7h 167 4 1348 146 5 37 574 HAVCR1,HAVCR2
SE_01_000600231 chr5:157030621-157064761 Sample_01_0006 Lung A549_ethanol_1h 231 6 1024 119 5 32 527 HAVCR1,HAVCR2
SE_03_000700177 chr5:157030787-157064854 Sample_03_0007 Lung A549_dexamethasone_12h 177 3 1023 119 5 32 527 HAVCR1,HAVCR2
SE_02_032200104 chr5:157030819-157070564 Sample_02_0322 Colon Caco-2 104 4 1172 134 5 34 527 HAVCR1,HAVCR2
SE_02_052400488 chr5:157031186-157064578 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 488 7 1012 117 5 32 527 HAVCR1,HAVCR2
SE_02_047700565 chr5:157031215-157073086 Sample_02_0477 Colon intestinal epithelial organoids_139a 565 17 1245 136 5 34 527 HAVCR1,HAVCR2,MED7,TIMD4
SE_03_001500178 chr5:157032127-157073816 Sample_03_0015 Lung A549_dexamethasone_8h 178 6 1244 136 5 33 527 HAVCR1,HAVCR2
SE_03_000900216 chr5:157032142-157074634 Sample_03_0009 Lung A549_dexamethasone_3h 216 4 1263 138 5 35 527 HAVCR1,HAVCR2
SE_03_001400167 chr5:157032167-157074736 Sample_03_0014 Lung A549_dexamethasone_2h 167 3 1264 138 5 35 527 HAVCR1,HAVCR2
SE_03_001600203 chr5:157032201-157063117 Sample_03_0016 Lung A549_dexamethasone_6h 203 2 950 114 5 28 527 HAVCR1,HAVCR2
SE_03_000500203 chr5:157032304-157074194 Sample_03_0005 Lung A549_dexamethasone_0.5h 203 6 1248 137 5 35 527 HAVCR1,HAVCR2
SE_03_000400181 chr5:157032428-157073774 Sample_03_0004 Lung A549_dexamethasone_4h 181 5 1230 136 5 33 527 HAVCR1,HAVCR2
SE_02_042800178 chr5:157032656-157060118 Sample_02_0428 Kidney 12364284_VHL- 178 9 843 105 5 26 524 HAVCR1,HAVCR2
SE_01_001200461 chr5:157032736-157061385 Sample_01_0012 Lung A549_dexamethasone_1h 461 5 876 110 5 27 517 HAVCR1,HAVCR2
SE_02_152300080 chr5:157032814-157073153 Sample_02_1523 Lung A549 DMSO 80 9 1196 133 5 33 512 HAVCR1,HAVCR2
SE_04_000900254 chr5:157033218-157077088 Sample_04_0009 Lung A549 254 7 1287 143 5 39 487 HAVCR1,HAVCR2
SE_04_001000429 chr5:157033405-157077158 Sample_04_0010 Lung A549 TGFb 429 9 1287 143 5 39 487 HAVCR1,HAVCR2
SE_02_029500154 chr5:157033427-157061258 Sample_02_0295 Lung A549_TGFBeta_72h 154 6 856 107 4 26 487 HAVCR1,HAVCR2
SE_04_000500282 chr5:157033441-157072946 Sample_04_0005 Lung A549 FOXA2 overexpressed 282 9 1172 129 4 32 487 HAVCR1,HAVCR2
SE_04_000600169 chr5:157033488-157077129 Sample_04_0006 Lung A549 GFP control 169 9 1280 143 5 39 487 HAVCR1,HAVCR2
SE_02_158100439 chr5:157033499-157061121 Sample_02_1581 Renal OS-LM1 439 13 849 107 4 26 487 HAVCR1,HAVCR2
SE_04_000800113 chr5:157033513-157073705 Sample_04_0008 Lung A549 shRNA control 113 10 1188 132 4 32 487 HAVCR1,HAVCR2
SE_02_076201677 chr5:157033634-157061678 Sample_02_0762 Podocyte podocyte_CTL 1677 7 859 107 4 27 487 HAVCR1,HAVCR2
SE_02_056200119 chr5:157033638-157061148 Sample_02_0562 Lung A549_Dex-treated 119 8 847 107 4 26 487 HAVCR1,HAVCR2
SE_04_000700126 chr5:157033643-157073075 Sample_04_0007 Lung A549 FOXA2 shRNA2 126 10 1170 130 4 32 487 HAVCR1,HAVCR2
SE_04_000400172 chr5:157033765-157073261 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 172 8 1171 130 4 32 487 HAVCR1,HAVCR2
SE_04_000300158 chr5:157033926-157073024 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 158 9 1159 130 4 32 487 HAVCR1,HAVCR2
SE_03_001300405 chr5:157042468-157064966 Sample_03_0013 Lung A549 405 1 690 73 3 30 429 HAVCR1,HAVCR2
SE_03_001100150 chr5:157044501-157074567 Sample_03_0011 Lung A549_dexamethasone_5h 150 3 909 90 2 30 407 HAVCR1,HAVCR2
SE_02_028600511 chr5:157056533-157066567 Sample_02_0286 Liver HuH7_IL-1alpha_1h 511 2 314 24 0 10 191 HAVCR1,HAVCR2
SE_00_000800031 chr5:157141419-157233941 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 31 13 2711 263 7 162 1031 MED7,FAM71B,ITK,CYFIP2,HAVCR2
SE_02_022600447 chr5:157148590-157223690 Sample_02_0226 Blood KOPTK1 447 11 2215 190 7 130 794 FAM71B,ITK,MED7,CYFIP2,HAVCR2
SE_02_045500052 chr5:157153920-157227646 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 52 28 2209 189 7 130 794 FAM71B,ITK,HAVCR2,MED7,CYFIP2
SE_02_104200048 chr5:157154161-157257993 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 48 49 3033 285 9 230 1634 FAM71B,ITK,HAVCR2,MED7,CYFIP2
SE_02_045600128 chr5:157154382-157227663 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 128 31 2200 188 7 130 794 FAM71B,ITK,HAVCR2,MED7,CYFIP2
SE_02_045700090 chr5:157154454-157199604 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 90 16 1349 101 7 82 473 FAM71B,ITK,HAVCR2,MED7
SE_00_004700043 chr5:157154633-157233377 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 43 27 2364 224 7 152 872 FAM71B,ITK,HAVCR2,MED7,CYFIP2
SE_02_002600205 chr5:157154638-157233650 Sample_02_0026 Blood CD4donorE 205 18 2368 224 7 153 872 FAM71B,ITK,MED7,CYFIP2,HAVCR2
SE_02_059100273 chr5:157154667-157223254 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 273 25 2056 163 7 127 794 FAM71B,ITK,HAVCR2,MED7,CYFIP2
Genomic distribution of SEs associated with HAVCR2
Genome Browser

The strength of the tissue affected by the gene

Expression of HAVCR2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)