SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000063515
Gene: GSC2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr22:19146993-19150292 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_118100433 chr22:19057419-19124925 Sample_02_1181 Brain GBM10 433 16 2065 340 5 72 669 DGCR2,DGCR14,DGCR9,TSSK2,LINC01311,DGCR11,GSC2,DGCR10
SE_02_104700299 chr22:19057677-19143085 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 299 38 2656 395 7 184 2270 DGCR14,TSSK2,DGCR2,SLC25A1,DGCR11,DGCR9,GSC2,LINC01311,DGCR10
SE_02_103602192 chr22:19066077-19119732 Sample_02_1036 Mammary gland HCC70_XY018 2192 22 1621 270 5 21 167 DGCR2,DGCR14,TSSK2,DGCR9,DGCR11,GSC2,DGCR10
SE_01_002400632 chr22:19071757-19123408 Sample_01_0024 Blood CD14-positive-monocyte 632 10 1529 262 5 50 270 DGCR2,TSSK2,DGCR11,GSC2,DGCR10,DGCR14
SE_01_010100516 chr22:19076310-19123211 Sample_01_0101 Pancreas pancreas_54y 516 12 1377 236 5 50 270 DGCR2,DGCR14,TSSK2,LINC01311,DGCR11,GSC2
SE_02_153000296 chr22:19079712-19123508 Sample_02_1530 Peripheral blood neutrophils_0BA0X 296 11 1281 227 5 50 270 DGCR2,DGCR14,TSSK2,LINC01311,DGCR11,GSC2
SE_02_153100353 chr22:19082040-19120018 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 353 19 1132 207 5 16 74 DGCR2,DGCR14,TSSK2,DGCR11,GSC2
SE_02_152900334 chr22:19082047-19138986 Sample_02_1529 Peripheral blood neutrophils_0BC75 334 23 1728 274 7 148 1501 DGCR14,TSSK2,DGCR2,SLC25A1,LINC01311,DGCR11,GSC2
SE_02_010400214 chr22:19082798-19122408 Sample_02_0104 Blood neutrophils 214 10 1175 213 5 45 199 DGCR2,TSSK2,DGCR11,DGCR14,GSC2
SE_01_005200520 chr22:19084140-19117610 Sample_01_0052 Blood neutrophil 520 6 1008 189 5 16 74 DGCR2,TSSK2,DGCR11,DGCR14,GSC2
SE_02_010100931 chr22:19084788-19123402 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 931 5 1130 203 5 50 270 DGCR2,TSSK2,DGCR11,DGCR14,GSC2
SE_02_093801327 chr22:19084853-19122468 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1327 7 1102 198 5 47 209 DGCR2,DGCR14,TSSK2,LINC01311,DGCR11,GSC2,SLC25A1
SE_00_000600583 chr22:19084895-19123514 Sample_00_0006 Blood CD14-positive-monocyte 583 5 1126 202 5 50 270 DGCR2,TSSK2,DGCR11,DGCR14,GSC2
SE_02_122900187 chr22:19085364-19124538 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 187 24 1141 202 5 50 270 DGCR2,DGCR14,TSSK2,LINC01311,DGCR11,GSC2
SE_02_009900860 chr22:19085372-19122492 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 860 6 1093 197 5 49 222 DGCR2,TSSK2,DGCR11,DGCR14,GSC2
SE_02_104300779 chr22:19086189-19138231 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 779 24 1583 246 7 142 1434 DGCR14,TSSK2,DGCR2,SLC25A1,LINC01311,DGCR11,GSC2
SE_02_039601319 chr22:19086384-19140901 Sample_02_0396 Skin NHEK-D 1319 12 1652 248 7 156 1742 TSSK2,DGCR2,DGCR14,DGCR11,SLC25A1,GSC2
SE_01_007100411 chr22:19097264-19123115 Sample_01_0071 Pancreas body-of-pancreas 411 5 736 124 5 43 196 DGCR2,TSSK2,DGCR11,DGCR14,GSC2
SE_02_095600703 chr22:19097551-19138705 Sample_02_0956 Brain IDH1_2658 703 14 1230 175 7 141 1427 DGCR14,TSSK2,DGCR2,SLC25A1,LINC01311,DGCR11,GSC2
SE_02_095500137 chr22:19097838-19124669 Sample_02_0955 Brain IDH1_2469 137 9 753 125 5 43 196 DGCR2,DGCR14,TSSK2,LINC01311,DGCR11,GSC2
SE_02_123900586 chr22:19106789-19142763 Sample_02_1239 Skin Waga_virus_positive 586 8 1075 136 5 150 1748 DGCR14,TSSK2,DGCR2,SLC25A1,LINC01311,GSC2
SE_02_062300268 chr22:19167834-19180069 Sample_02_0623 Mammary gland TAMR_E2 268 3 353 53 17 103 1150 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_039600480 chr22:19167947-19204129 Sample_02_0396 Skin NHEK-D 480 9 1096 144 41 106 1935 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_062400369 chr22:19168017-19185004 Sample_02_0624 Mammary gland TAMR_VEH 369 5 496 70 23 105 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_103000437 chr22:19168422-19184866 Sample_02_1030 Colon DKO 437 7 477 66 22 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_085200224 chr22:19168573-19185554 Sample_02_0852 Mammary gland MCF7L-P 224 5 492 68 22 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_115900226 chr22:19168573-19185653 Sample_02_1159 Mammary gland MCF7 226 5 497 68 22 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_085300467 chr22:19168637-19186232 Sample_02_0853 Mammary gland MCF7L-TamR 467 4 508 68 21 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_010600474 chr22:19168954-19172866 Sample_02_0106 Skin NHEK_M 474 2 103 16 4 8 0 TSSK2,SLC25A1,GSC2,DGCR14,DGCR2
SE_02_108300935 chr22:19168986-19225605 Sample_02_1083 Macula macula 935 22 1672 211 52 105 2742 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_032400265 chr22:19169015-19181235 Sample_02_0324 Colon SW48 265 1 345 51 17 103 1314 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_104900767 chr22:19169154-19182634 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 767 4 376 52 16 103 1314 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_104700582 chr22:19169164-19196686 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 582 9 849 113 31 105 1780 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_046600770 chr22:19169208-19178813 Sample_02_0466 Adipose visceral adipocytes 770 2 266 37 11 84 910 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_122900120 chr22:19169215-19185906 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 120 5 489 65 20 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_140500116 chr22:19169231-19183277 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 116 5 395 55 18 103 1327 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_005600778 chr22:19169326-19179770 Sample_02_0056 Mammary gland HMEC 778 4 292 40 12 102 1078 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_102900494 chr22:19169326-19185799 Sample_02_1029 Colon HCT116 494 6 479 64 20 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_103501396 chr22:19169329-19175900 Sample_02_1035 Mammary gland HCC70_Vehicle 1396 4 182 30 10 19 140 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_103601209 chr22:19169332-19175891 Sample_02_1036 Mammary gland HCC70_XY018 1209 3 180 30 10 19 139 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_035500332 chr22:19169335-19185325 Sample_02_0355 Colon HCT15 332 3 464 62 20 104 1436 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_114200297 chr22:19169338-19181367 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 297 6 339 49 16 103 1314 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_088400934 chr22:19169418-19185811 Sample_02_0884 Colon LoVo 934 4 476 64 20 104 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_109900470 chr22:19169467-19173754 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 470 2 116 19 5 8 0 LINC01311,DGCR14,DGCR2,SLC25A1,TSSK2,GSC2
SE_02_046500542 chr22:19169494-19178806 Sample_02_0465 Adipose subcutaneous adipocytes 542 2 256 36 11 83 909 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_04_000200123 chr22:19169584-19180175 Sample_04_0002 Blood cold shocked K562 123 1 297 41 14 101 1175 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_078000380 chr22:19169867-19188286 Sample_02_0780 Liver SMMC-7721 380 2 536 72 23 103 1604 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_076500413 chr22:19170079-19181318 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 413 2 321 48 16 99 1314 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_035900694 chr22:19170082-19180299 Sample_02_0359 Colon Colo741 694 1 294 43 14 98 1189 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_127300402 chr22:19170330-19186664 Sample_02_1273 Cervix HeLa 402 5 474 64 20 100 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_029300174 chr22:19170486-19180004 Sample_02_0293 Pancreatic L3-6_4SC-202 174 1 269 38 13 98 1126 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_076000701 chr22:19170558-19186036 Sample_02_0760 Ovary BIN-67_SMARCA4 701 3 454 60 19 100 1436 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_055500497 chr22:19170595-19188135 Sample_02_0555 Other HAP1_WT 497 4 508 68 22 101 1576 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_04_000100215 chr22:19170622-19180234 Sample_04_0001 Blood heat shocked K562 215 2 269 36 12 98 1181 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_040400318 chr22:19170658-19186299 Sample_02_0404 Mammary gland ZR-75-1_2 318 3 452 59 18 100 1436 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_058400519 chr22:19170670-19179873 Sample_02_0584 Lung H1299 WT 519 2 256 35 11 98 1097 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_01_008200874 chr22:19170676-19180505 Sample_01_0082 Right lobe of liver right-lobe-of-liver 874 1 280 38 12 98 1216 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_001500383 chr22:19170733-19180147 Sample_02_0015 Liver HepG2_shNS 383 2 265 36 12 98 1170 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_111600112 chr22:19170780-19180131 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 112 3 263 36 12 98 1166 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_021601117 chr22:19170834-19181928 Sample_02_0216 Skin NHEK_scramble 1117 8 314 44 14 99 1314 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_110600314 chr22:19170897-19178654 Sample_02_1106 Brain NGP 314 1 217 30 8 73 861 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_111400051 chr22:19170911-19178873 Sample_02_1114 Embryonic kidney HEK293 51 1 220 31 9 90 939 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_142400031 chr22:19170953-19178763 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 31 2 219 31 9 74 897 LINC01311,SLC25A1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_021500226 chr22:19170955-19183744 Sample_02_0215 Skin NHEK_siGRHL3 226 3 367 51 16 99 1419 CLTCL1,SLC25A1,TSSK2,GSC2,DGCR14,DGCR2
SE_02_138500401 chr22:19170976-19219043 Sample_02_1385 Other iPSCs 401 9 1424 186 47 101 2360 LINC01311,SLC25A1,CLTCL1,DGCR14,DGCR2,TSSK2,GSC2
SE_02_072600586 chr22:19172966-19175832 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 586 1 82 14 7 7 121 SLC25A1,DGCR14,TSSK2,LINC01311,GSC2
SE_02_104301791 chr22:19173628-19219026 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1791 10 1353 173 44 97 2360 SLC25A1,CLTCL1,DGCR14,TSSK2,LINC01311,GSC2
SE_02_113000762 chr22:19175988-19179589 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 762 1 104 10 2 80 878 SLC25A1,CLTCL1,DGCR14,TSSK2,LINC01311,GSC2
SE_02_123500605 chr22:19196034-19210074 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 605 8 395 44 14 0 482 CLTCL1,GSC2,LINC01311,SLC25A1
Genomic distribution of SEs associated with GSC2
Genome Browser

The strength of the tissue affected by the gene

Expression of GSC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)