SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000231216
Gene: GS1-600G8.3 Gene type: lncRNA
Strand: + External links:
Genomic region: chrX:13310652-13319933 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_144500009 chrX:13048508-13305467 Sample_02_1445 Adipose SW872_TAZ4SA 9 46 4661 150 1 410 0 LINC01203,FAM9C,GS1-600G8.3,ATXN3L
SE_02_044600019 chrX:13055511-13306328 Sample_02_0446 Bone osteosarcoma tumor P2 19 95 4546 143 1 416 0 LINC01203,FAM9C,GS1-600G8.3,ATXN3L
SE_02_105300055 chrX:13187167-13265070 Sample_02_1053 Esophagus OACM5.1 55 25 1490 42 1 190 0 GS1-600G8.3
SE_02_082500293 chrX:13190694-13304660 Sample_02_0825 Stomach SNU484 293 60 2136 60 1 237 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_101500680 chrX:13240981-13290081 Sample_02_1015 Embryo H9_ Undifferentiated 680 9 927 21 0 105 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_077000704 chrX:13252935-13300009 Sample_02_0770 Ovary OVCA429_shLuc 704 22 854 18 0 81 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_138300214 chrX:13253592-13304914 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 214 46 919 20 0 81 0 LINC01203,GS1-600G8.3,ATXN3L,FAM9C
SE_02_138100250 chrX:13253734-13305219 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 250 45 919 20 0 81 0 LINC01203,GS1-600G8.3,ATXN3L,FAM9C
SE_02_101701824 chrX:13254029-13306382 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1824 6 926 20 0 85 0 LINC01203,GS1-600G8.3,ATXN3L,FAM9C
SE_02_063000312 chrX:13254041-13280352 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 312 7 499 8 0 65 0 GS1-600G8.3,ATXN3L,LINC01203
SE_02_154900445 chrX:13254050-13304419 Sample_02_1549 Gastrointestinal Stromal GIST-430B 445 16 902 20 0 79 0 LINC01203,GS1-600G8.3,ATXN3L,FAM9C
SE_02_063100366 chrX:13254088-13279708 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 366 4 491 7 0 62 0 GS1-600G8.3,ATXN3L,TMSB4X
SE_02_136800068 chrX:13254297-13304525 Sample_02_1368 Pancreas MIA PaCa-2-untreated 68 33 898 20 0 79 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_108400269 chrX:13254344-13294261 Sample_02_1084 Blood KBM7-derived near haploid cells 269 16 732 15 0 79 0 LINC01203,GS1-600G8.3,ATXN3L
SE_01_011100454 chrX:13264820-13307803 Sample_01_0111 Brain SK-N-SH 454 21 736 18 0 80 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_125900472 chrX:13265429-13304156 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 472 12 673 18 0 70 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_062900691 chrX:13268687-13279583 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 691 3 202 5 0 34 0 GS1-600G8.3,ATXN3L
SE_02_071300500 chrX:13269242-13306657 Sample_02_0713 Pancreas BxPC3_sgTP63 500 15 640 18 0 59 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_076700775 chrX:13269383-13294096 Sample_02_0767 Ovary OVCA429 775 13 444 13 0 52 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_071200764 chrX:13269810-13303992 Sample_02_0712 Pancreas BxPC3_sgNEG 764 11 588 18 0 50 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_070701074 chrX:13270059-13295528 Sample_02_0707 Pancreas BxPC3 WT 1074 11 451 13 0 50 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_084000850 chrX:13277592-13292180 Sample_02_0840 Embryo hNPCs_R1159Q/+ 850 6 264 8 0 23 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_077101264 chrX:13281211-13298512 Sample_02_0771 Ovary OVCA429_shGRHL2 1264 8 306 10 0 13 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_156901412 chrX:13282202-13304595 Sample_02_1569 Endothelial Endothelial cells 1412 8 381 12 0 13 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_126301525 chrX:13282233-13303986 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1525 9 369 12 0 13 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_126000754 chrX:13282954-13304185 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 754 10 355 12 0 13 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_088001480 chrX:13283041-13303820 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1480 5 346 12 0 13 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_087801527 chrX:13283250-13305812 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1527 9 376 12 0 12 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_113200793 chrX:13283357-13299425 Sample_02_1132 Pancreas KLM1 wt 793 10 282 10 0 12 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_126200803 chrX:13283680-13304096 Sample_02_1262 Bone Im-GCT-3504_G34W 803 7 342 12 0 12 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_068701194 chrX:13338939-13379350 Sample_02_0687 Lung NCI-H146_no infection 1194 9 757 26 0 179 140 LINC01203,GS1-600G8.3,ATXN3L,TCEANC
SE_02_071300473 chrX:13339410-13401405 Sample_02_0713 Pancreas BxPC3_sgTP63 473 21 1195 47 1 216 140 LINC01203,GS1-600G8.3,ATXN3L
SE_02_084000001 chrX:13356657-13491190 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1 44 2827 72 4 440 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_101700631 chrX:13356915-13430899 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 631 14 1505 52 3 261 0 LINC01203,GS1-600G8.3,ATXN3L,TCEANC
SE_02_108000548 chrX:13357021-13404791 Sample_02_1080 Muscle JR1 shCtrl 548 17 942 45 1 195 0 LINC01203,GS1-600G8.3,ATXN3L,TCEANC
SE_02_044700115 chrX:13357080-13436224 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 115 34 1626 52 4 273 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_044600016 chrX:13357127-13553000 Sample_02_0446 Bone osteosarcoma tumor P2 16 79 4146 127 5 542 0 LINC01203,EGFL6,GS1-600G8.3,MIR6086,ATXN3L
SE_02_101500608 chrX:13357248-13429368 Sample_02_1015 Embryo H9_ Undifferentiated 608 16 1471 52 3 258 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_059400870 chrX:13357551-13434236 Sample_02_0594 iPSC-derived neural progenitors 870 13 1566 52 3 262 0 LINC01203,GS1-600G8.3,ATXN3L,TCEANC
SE_01_011501083 chrX:13357583-13399811 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1083 12 813 38 1 171 0 LINC01203,GS1-600G8.3,ATXN3L,TCEANC
SE_02_044300517 chrX:13357669-13403601 Sample_02_0443 Bone MG63 517 25 891 43 1 190 0 LINC01203,GS1-600G8.3,ATXN3L,TCEANC
SE_02_150300622 chrX:13357672-13433411 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 622 23 1544 52 3 260 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_083900152 chrX:13357755-13400408 Sample_02_0839 Embryo hNPCs_K755R/+ 152 11 823 38 1 172 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_129200482 chrX:13357788-13378358 Sample_02_1292 Lung JHU-LX110-SCLC PDX 482 8 362 14 0 139 0 LINC01203,GS1-600G8.3,ATXN3L,EGFL6
SE_02_157100228 chrX:13357827-13400258 Sample_02_1571 Fibroblast Fibroblast cells 228 7 822 38 1 169 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_151700102 chrX:13357835-13400484 Sample_02_1517 Mammary gland non-transformed human mammary epithelial cell 102 8 825 38 1 170 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_074100540 chrX:13357929-13399859 Sample_02_0741 Muscle RH30 540 15 809 38 1 169 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_077000358 chrX:13357935-13433133 Sample_02_0770 Ovary OVCA429_shLuc 358 38 1530 52 3 258 0 LINC01203,GS1-600G8.3,ATXN3L
SE_02_144500250 chrX:13358133-13435100 Sample_02_1445 Adipose SW872_TAZ4SA 250 20 1576 52 4 265 0 LINC01203,GS1-600G8.3,ATXN3L
Genomic distribution of SEs associated with GS1-600G8.3
Genome Browser

The strength of the tissue affected by the gene

Expression of GS1-600G8.3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)