SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000159289
Gene: GOLGA6A Gene type: protein_coding
Strand: - External links:
Genomic region: chr15:74069857-74082550 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_147100129 chr15:73939485-74041621 Sample_02_1471 Blood Outgrowth Endothelia BOEC 129 15 2755 268 16 278 3601 PML,STOML1,LOXL1,LOXL1-AS1,GOLGA6A
SE_02_127800068 chr15:73950485-74051766 Sample_02_1278 Chordoma UCH1_DMSO_48h 68 24 2730 259 15 237 3943 PML,STOML1,LOXL1,LOXL1-AS1,GOLGA6A
SE_02_095000354 chr15:73950804-74041240 Sample_02_0950 Umbilical vein HUVEC_WT 354 28 2428 244 12 200 3074 PML,STOML1,LOXL1,LOXL1-AS1,GOLGA6A
SE_02_058500240 chr15:73951353-74041167 Sample_02_0585 Umbilical vein HUVEC 0hour 240 17 2409 242 12 196 3074 PML,STOML1,LOXL1,LOXL1-AS1,GOLGA6A
SE_02_151800291 chr15:73951568-74033123 Sample_02_1518 Umbilical vein HUVEC_Scr 291 19 2150 214 6 175 2386 PML,STOML1,LOXL1,LOXL1-AS1,GOLGA6A
SE_02_146900676 chr15:73973138-74041297 Sample_02_1469 Umbilical Vein HUVEC 676 14 1772 180 10 148 2912 PML,STOML1,LOXL1-AS1,GOLGA6A,LOXL1
SE_02_143600167 chr15:73979957-74052744 Sample_02_1436 Liver LSEC-Ctrl 167 16 1728 178 13 184 3781 PML,STOML1,GOLGA6A
SE_02_026100279 chr15:73980105-74052991 Sample_02_0261 Osteoblastic hFOB_differentiated 279 5 1738 178 13 184 3781 PML,STOML1,GOLGA6A
SE_01_009000077 chr15:73980388-74053084 Sample_01_0090 Lung upper-lobe-of-left-lung 77 10 1739 178 13 184 3781 PML,STOML1,GOLGA6A
SE_02_143800157 chr15:73980656-74053102 Sample_02_1438 Liver LSEC 157 18 1727 177 13 184 3781 PML,STOML1,GOLGA6A
SE_01_007800349 chr15:73981004-74053165 Sample_01_0078 Heart left ventricle heart-left-ventricle 349 9 1723 177 13 184 3781 PML,STOML1,GOLGA6A
SE_01_007200200 chr15:73981128-74054290 Sample_01_0072 Breast epithelium breast-epithelium 200 12 1755 178 13 184 3781 PML,STOML1,GOLGA6A
SE_01_006900236 chr15:73981231-74053027 Sample_01_0069 Adrenal gland adrenal-gland 236 12 1709 176 13 184 3781 PML,STOML1,GOLGA6A
SE_01_008400650 chr15:73981326-74052867 Sample_01_0084 Spleen spleen 650 12 1698 176 13 184 3781 PML,STOML1,GOLGA6A
SE_01_008200476 chr15:73981403-74053022 Sample_01_0082 Right lobe of liver right-lobe-of-liver 476 11 1703 176 13 184 3781 PML,STOML1,GOLGA6A
SE_02_091100256 chr15:73981435-74052442 Sample_02_0911 Heart left ventricle_DCM_LV1290 256 23 1680 174 13 184 3781 PML,STOML1,GOLGA6A
SE_00_002200093 chr15:73981471-74052533 Sample_00_0022 Lung lung_30y 93 16 1681 174 13 184 3781 PML,STOML1,GOLGA6A,ISLR,ISLR2,PL,STOL1
SE_00_004600340 chr15:73981582-74051220 Sample_00_0046 Heart right ventricle_34y 340 18 1655 173 13 178 3781 PML,STOML1,GOLGA6A,ISLR,TBC1D21,ISLR2
SE_02_112900059 chr15:73981648-74051950 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 59 33 1664 173 13 184 3781 PML,STOML1,GOLGA6A
SE_02_104301181 chr15:74000324-74066135 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1181 18 1714 148 12 133 2548 PML,STOML1,GOLGA6A
SE_02_156801173 chr15:74010340-74052301 Sample_02_1568 Heart Cardiac progenitor cells 1173 4 1008 104 12 71 2376 PML,STOML1,GOLGA6A
SE_02_132800395 chr15:74010558-74053104 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 395 12 1030 107 12 71 2376 PML,STOML1,GOLGA6A
SE_02_082700451 chr15:74022540-74066470 Sample_02_0827 Stomach normal gastric 451 7 1212 90 9 124 2548 PML,STOML1,GOLGA6A
SE_02_114500661 chr15:74022865-74053897 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 661 16 800 73 9 64 2353 PML,STOML1,GOLGA6A
SE_02_061300754 chr15:74024606-74066226 Sample_02_0613 Liposarcoma MLPS_T1 754 19 1175 88 9 112 2408 PML,STOML1,GOLGA6A
SE_02_021600388 chr15:74024816-74066400 Sample_02_0216 Skin NHEK_scramble 388 11 1173 87 9 113 2377 PML,STOML1,GOLGA6A
SE_02_063800495 chr15:74024823-74053945 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 495 7 768 72 9 54 2204 PML,STOML1,GOLGA6A
SE_02_155900365 chr15:74024877-74065761 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 365 14 1159 87 9 111 2371 PML,STOML1,GOLGA6A
SE_02_141500411 chr15:74025706-74054003 Sample_02_1415 Brain DIPGIV 411 7 747 67 8 52 2050 PML,STOML1,GOLGA6A
SE_02_156500316 chr15:74035596-74053017 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 316 9 471 38 8 43 1084 PML,STOML1,GOLGA6A
SE_02_119900837 chr15:74036724-74053996 Sample_02_1199 Brain GBM35 837 8 466 33 8 43 869 PML,STOML1,GOLGA6A
SE_02_024300491 chr15:74037816-74054135 Sample_02_0243 Foreskin foreskin_HFFs 491 3 429 31 8 42 869 PML,STOML1,GOLGA6A
SE_02_008800623 chr15:74038112-74052555 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 623 4 355 27 8 42 869 PML,STOML1,GOLGA6A
SE_02_113300894 chr15:74038119-74053970 Sample_02_1133 Liver Hepatic stellate cells 894 6 414 31 8 42 869 PML,STOML1,GOLGA6A
SE_02_135600861 chr15:74038566-74052906 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 861 2 368 29 8 42 869 PML,STOML1,GOLGA6A
SE_02_063700705 chr15:74038590-74053863 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 705 6 403 29 8 42 869 PML,STOML1,GOLGA6A
SE_02_086700783 chr15:74038656-74054536 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 783 14 428 31 8 42 869 PML,STOML1,GOLGA6A
SE_02_157100884 chr15:74038742-74053968 Sample_02_1571 Fibroblast Fibroblast cells 884 3 404 29 7 42 869 PML,STOML1,GOLGA6A
SE_02_117200627 chr15:74083246-74100628 Sample_02_1172 Embryo H9 WT 627 2 75 3 0 0 0 ISLR2,GOLGA6A,LOC283731
SE_02_157000736 chr15:74083553-74100702 Sample_02_1570 iPSCs EiPSC 736 3 75 3 0 0 0 ISLR2,GOLGA6A,LOC283731
SE_02_156701215 chr15:74083609-74100745 Sample_02_1567 iPSCs CiPSC 1215 4 75 3 0 0 0 ISLR2,GOLGA6A,LOC283731
SE_02_116000419 chr15:74084604-74109519 Sample_02_1160 Embryo H1_shLuc 419 7 199 5 0 0 0 ISLR2,GOLGA6A,LOC283731,CCDC33
SE_02_116100298 chr15:74084726-74100608 Sample_02_1161 Embryo H1_shZNF587 298 7 71 3 0 0 0 ISLR2,GOLGA6A,LOC283731,CCDC33
SE_02_067600253 chr15:74084895-74100493 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 253 3 71 3 0 0 0 ISLR2,GOLGA6A,LOC283731
SE_02_067700292 chr15:74085218-74100649 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 292 8 71 3 0 0 0 ISLR2,GOLGA6A,LOC283731
SE_02_067800234 chr15:74085268-74100546 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 234 8 71 3 0 0 0 ISLR2,GOLGA6A,LOC283731
SE_02_041700149 chr15:74090719-74100907 Sample_02_0417 Embryo H9_Null 149 3 44 1 0 0 0 ISLR2,LOC283731,GOLGA6A,ISLR
SE_02_110500237 chr15:74120761-74140772 Sample_02_1105 Brain NBL-S 237 10 412 7 0 10 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_124500147 chr15:74120939-74162818 Sample_02_1245 Brain LAN5_Ethanol 147 12 911 13 1 10 1966 ISLR2,LOC283731,ISLR,STRA6,GOLGA6A
SE_02_027500150 chr15:74121595-74138010 Sample_02_0275 Retina FW14 150 2 334 4 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_027700218 chr15:74121908-74138244 Sample_02_0277 Retina FW18 218 2 334 5 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_158500461 chr15:74121989-74137910 Sample_02_1585 Blood SupB15 DMSO 461 5 326 4 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_156000581 chr15:74122130-74140679 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 581 6 376 6 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_067200741 chr15:74122147-74139322 Sample_02_0672 Endometrium endometrium cancer_DSG 741 5 349 5 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_155900520 chr15:74122164-74140639 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 520 5 374 6 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_067400615 chr15:74122488-74137959 Sample_02_0674 Endometrium E1_FA 615 5 320 4 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_155300916 chr15:74122616-74139122 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 916 7 331 5 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_155800381 chr15:74122677-74137599 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 381 3 307 4 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_106400365 chr15:74125119-74140844 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 365 5 305 6 0 0 1966 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_025100209 chr15:74126433-74141149 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 209 3 288 6 0 0 1949 ISLR2,LOC283731,ISLR,GOLGA6A
SE_01_005000110 chr15:74126622-74140791 Sample_01_0050 Embryo neural-cell 110 3 274 6 0 0 1914 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_025300344 chr15:74126626-74158846 Sample_02_0253 Brain BE2C_DMSO 344 4 669 10 1 0 1913 ISLR2,LOC283731,STRA6,ISLR,GOLGA6A
SE_02_034000195 chr15:74126633-74141457 Sample_02_0340 Brain BE2C_2 195 2 288 6 0 0 1912 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_027600169 chr15:74126734-74138170 Sample_02_0276 Retina FW15 169 2 216 5 0 0 1903 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_029900377 chr15:74126796-74132349 Sample_02_0299 Neuroblastoma CLB-MA 377 1 118 3 0 0 952 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_007600230 chr15:74127019-74141089 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 230 4 270 6 0 0 1863 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_123800097 chr15:74127065-74145601 Sample_02_1238 Skin MS1_virus_positive 97 8 377 8 0 0 1854 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_042100662 chr15:74127096-74158604 Sample_02_0421 Brain BE2C_3 662 5 653 10 1 0 1847 ISLR2,LOC283731,STRA6,ISLR,GOLGA6A
SE_02_007500215 chr15:74127127-74141077 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 215 4 269 6 0 0 1842 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_106300537 chr15:74127155-74141099 Sample_02_1063 Brain CLB-GA-control 537 3 269 6 0 0 1836 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_123900419 chr15:74127224-74144978 Sample_02_1239 Skin Waga_virus_positive 419 5 367 8 0 0 1836 ISLR2,LOC283731,ISLR,GOLGA6A
SE_02_110300186 chr15:74127330-74139895 Sample_02_1103 Brain NB-1643 186 1 243 5 0 0 1829 ISLR2,LOC283731,ISLR,GOLGA6A
Genomic distribution of SEs associated with GOLGA6A
Genome Browser

The strength of the tissue affected by the gene

Expression of GOLGA6A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)