SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000232284
Gene: GNG12-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr1:67832303-68202987 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_156800099 chr1:67663412-67794661 Sample_02_1568 Heart Cardiac progenitor cells 99 27 3579 164 16 313 1000 GNG12,GADD45A,GNG12-AS1
SE_02_090400783 chr1:67674147-67786633 Sample_02_0904 Heart left ventricle_DCM_LV1028 783 23 3057 144 12 294 1000 GNG12,GADD45A,GNG12-AS1
SE_02_144500196 chr1:67674293-67802731 Sample_02_1445 Adipose SW872_TAZ4SA 196 29 3515 177 20 313 1000 GNG12,GADD45A,GNG12-AS1
SE_02_092100367 chr1:67674371-67796644 Sample_02_0921 Heart embryonic heart_CS22 367 29 3350 158 18 307 1000 GNG12,GADD45A,GNG12-AS1
SE_02_092200275 chr1:67674434-67815913 Sample_02_0922 Heart fetal heart_PCW10_12434 275 38 3816 210 21 322 1000 GNG12,GADD45A,GNG12-AS1
SE_02_092300316 chr1:67674477-67794756 Sample_02_0923 Heart fetal heart_PCW10_12522 316 24 3290 155 15 301 1000 GNG12,GADD45A,GNG12-AS1
SE_02_088000025 chr1:67678035-67815128 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 25 26 3699 205 21 287 1000 GNG12,GADD45A,GNG12-AS1
SE_02_088100030 chr1:67678246-67815334 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 30 31 3696 205 21 286 1000 GNG12,GADD45A,GNG12-AS1
SE_02_087800031 chr1:67678251-67815257 Sample_02_0878 Ovary SVOG3e cells_noDox_control 31 27 3693 205 21 286 1000 GNG12,GADD45A,GNG12-AS1
SE_02_111100086 chr1:67679668-67816809 Sample_02_1111 Other HGrC1_SMAD2/3KO 86 56 3704 212 21 286 1000 GNG12,GADD45A,GNG12-AS1
SE_02_047400099 chr1:67680035-67802403 Sample_02_0474 Fibroblast umbilical cord Fibroblast 99 33 3348 172 20 275 1000 GNG12,GADD45A,GNG12-AS1
SE_02_137700043 chr1:67680257-67794577 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 43 37 3122 152 15 262 1000 GNG12,GADD45A,GNG12-AS1
SE_02_137800112 chr1:67680361-67795288 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 112 46 3146 154 17 263 1000 GNG12,GADD45A,GNG12-AS1
SE_02_143600064 chr1:67681273-67816664 Sample_02_1436 Liver LSEC-Ctrl 64 41 3642 209 21 283 1000 GNG12,GADD45A,GNG12-AS1
SE_02_158300045 chr1:67681916-67815961 Sample_02_1583 Fetal lung IMR90_empty_GM 45 61 3596 205 21 281 1000 GNG12,GADD45A,GNG12-AS1
SE_02_141600183 chr1:67682974-67803349 Sample_02_1416 Brain SF9402 183 21 3283 175 20 269 1000 GNG12,GADD45A,GNG12-AS1
SE_02_053400063 chr1:67703934-67817077 Sample_02_0534 Blood vessel Circle of Willis_60y 63 36 3056 168 17 187 321 GNG12,GADD45A,GNG12-AS1
SE_02_156900095 chr1:67706430-67796476 Sample_02_1569 Endothelial Endothelial cells 95 25 2472 109 13 160 129 GNG12,GADD45A,GNG12-AS1
SE_02_142800601 chr1:67706445-67795304 Sample_02_1428 Shoulder fibroblast_316 601 32 2437 109 13 154 129 GNG12,GADD45A,GNG12-AS1
SE_02_137600375 chr1:67706955-67794836 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 375 28 2401 104 11 154 129 GNG12,GADD45A,GNG12-AS1
SE_02_142700666 chr1:67707036-67795068 Sample_02_1427 Shoulder fibroblast_343 666 25 2409 105 11 154 129 GNG12,GADD45A,GNG12-AS1
SE_01_010700538 chr1:67708451-67794519 Sample_01_0107 Esophagus esophagus squamous epithelium 538 27 2351 101 11 149 82 GNG12,GADD45A,GNG12-AS1
SE_02_143301756 chr1:67708573-67804792 Sample_02_1433 Bone A673 STAG2 null 1756 23 2636 129 16 161 82 GNG12,GADD45A,GNG12-AS1
SE_02_061400735 chr1:67736131-67823952 Sample_02_0614 Liposarcoma MLPS_T2 735 26 2370 138 15 121 82 GNG12,GNG12-AS1
SE_02_111000287 chr1:67765769-67814713 Sample_02_1110 Other HGrC1 287 14 1329 88 9 48 82 GNG12,GNG12-AS1
SE_02_046501397 chr1:67780174-67819844 Sample_02_0465 Adipose subcutaneous adipocytes 1397 20 1038 86 13 37 0 GNG12,GNG12-AS1
SE_02_060501398 chr1:67785397-67815193 Sample_02_0605 Skin Skin Fibroblast_DMSO 1398 8 780 64 9 28 0 GNG12,GNG12-AS1
SE_02_113800574 chr1:67785608-67815928 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 574 7 794 67 9 29 0 GNG12,GNG12-AS1
SE_02_113700731 chr1:67786250-67815005 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 731 9 756 64 9 26 0 GNG12,GNG12-AS1
SE_02_058800406 chr1:67786385-67794971 Sample_02_0588 Cervix HeLa Kyoto_untreated 406 6 251 12 3 7 0 GNG12,GNG12-AS1
SE_02_106700414 chr1:67786550-67806006 Sample_02_1067 Bone SJSA-1 414 12 544 40 8 19 0 GNG12,GNG12-AS1
SE_02_059000288 chr1:67787161-67794554 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 288 7 211 10 3 6 0 GNG12,GNG12-AS1
SE_02_087901165 chr1:67787161-67795006 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1165 1 226 11 3 7 0 GNG12,GNG12-AS1
SE_02_058900205 chr1:67787225-67815862 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 205 6 744 65 9 28 0 GNG12,GNG12-AS1
SE_02_132800793 chr1:67787527-67815952 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 793 8 739 65 9 28 0 GNG12,GNG12-AS1
SE_02_092900273 chr1:67788379-67823103 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 273 14 877 88 13 36 0 GNG12,GNG12-AS1
SE_02_088301399 chr1:67789592-67795436 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1399 1 168 11 5 6 0 GNG12,GNG12-AS1
SE_02_077101291 chr1:67789618-67805627 Sample_02_0771 Ovary OVCA429_shGRHL2 1291 11 438 37 8 18 0 GNG12,GNG12-AS1
SE_02_088201322 chr1:67789634-67795038 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1322 1 149 10 3 6 0 GNG12,GNG12-AS1
SE_02_061001083 chr1:67789734-67803124 Sample_02_0610 Liposarcoma MLS 1765-92 1083 3 366 34 8 18 0 GNG12,GNG12-AS1
SE_02_093001330 chr1:67790689-67822479 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1330 11 793 82 13 34 0 GNG12,GNG12-AS1
Genomic distribution of SEs associated with GNG12-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of GNG12-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)