Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000176928 |
| Gene: | GCNT4 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr5:75025346-75052558 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_003300531 | chr5:74916135-74995892 |
Sample_02_0033 | Pancreas | pancreatic-islets-F | 531 | 11 | 2073 | 121 | 7 | 41 | 0 | GCNT4,FAM169A |
| SE_02_077600402 | chr5:74916507-74995786 |
Sample_02_0776 | Pancreas | EndoC-BH1 | 402 | 15 | 2067 | 121 | 7 | 41 | 0 | FAM169A,GCNT4 |
| SE_02_107500090 | chr5:74991645-75024120 |
Sample_02_1075 | Lymphoma | BC-3 | 90 | 8 | 836 | 99 | 5 | 7 | 0 | GCNT4,LINC01336 |
| SE_02_136000233 | chr5:75033196-75058312 |
Sample_02_1360 | Bladder | UMUC1_sonic_pSIN-puro_EV | 233 | 13 | 723 | 58 | 2 | 55 | 0 | LINC01336,GCNT4 |
| SE_02_094800698 | chr5:75034005-75054825 |
Sample_02_0948 | Pharyng | Detroit562 | 698 | 7 | 604 | 48 | 1 | 54 | 0 | LINC01336,GCNT4 |
| SE_02_039601929 | chr5:75034015-75054732 |
Sample_02_0396 | Skin | NHEK-D | 1929 | 6 | 601 | 48 | 1 | 54 | 0 | GCNT4,FAM169A |
| SE_02_124800275 | chr5:75034122-75054776 |
Sample_02_1248 | Bladder | RT4 | 275 | 5 | 598 | 48 | 1 | 54 | 0 | LINC01336,GCNT4 |
| SE_02_136100255 | chr5:75034163-75058570 |
Sample_02_1361 | Bladder | UMUC1_sonic_pSIN-puro_WTUTX | 255 | 10 | 697 | 56 | 2 | 55 | 0 | LINC01336,GCNT4 |
| SE_02_092900994 | chr5:75034171-75055754 |
Sample_02_0929 | Mid-gestation placenta | trophoblast__CytT | 994 | 17 | 620 | 49 | 1 | 55 | 0 | LINC01336,GCNT4 |
| SE_02_064701128 | chr5:75037546-75054658 |
Sample_02_0647 | Tracheobronchial epithelial | HTBE_H1N1_mock | 1128 | 3 | 495 | 40 | 1 | 48 | 0 | LINC01336,GCNT4 |
| SE_02_069700384 | chr5:75037720-75054858 |
Sample_02_0697 | Lung | NCI-H1048-cas9_sgHROSA | 384 | 3 | 497 | 41 | 1 | 48 | 0 | LINC01336,GCNT4 |
| SE_02_126600820 | chr5:75044120-75058294 |
Sample_02_1266 | Bone | Im-GCT-4072_G34W-repair_WT_E3 | 820 | 6 | 413 | 34 | 2 | 31 | 0 | LINC01336,GCNT4 |
| SE_02_126900809 | chr5:75044186-75055895 |
Sample_02_1269 | Bone | Im-GCT-4072_G34W-repair_WT_A4 | 809 | 5 | 343 | 27 | 1 | 31 | 0 | LINC01336,GCNT4 |
| SE_02_126501171 | chr5:75044225-75056690 |
Sample_02_1265 | Bone | Im-GCT-4072_G34W-repair_WT_D6 | 1171 | 6 | 363 | 28 | 1 | 31 | 0 | LINC01336,GCNT4 |
| SE_02_149201275 | chr5:75044506-75060790 |
Sample_02_1492 | Peripheral blood | CD34+ derived peripheral blood-derived mast cells | 1275 | 9 | 460 | 37 | 1 | 34 | 0 | LINC01336,GCNT4 |
| SE_02_005701130 | chr5:75045075-75054554 |
Sample_02_0057 | Mammary gland | vHMEC | 1130 | 3 | 287 | 25 | 0 | 29 | 0 | GCNT4,FAM169A |
| SE_02_064500853 | chr5:75045999-75054750 |
Sample_02_0645 | Tracheobronchial epithelial | HTBE_H1N1_18h | 853 | 2 | 258 | 23 | 0 | 29 | 0 | LINC01336,GCNT4 |
| SE_02_083600868 | chr5:75046364-75061281 |
Sample_02_0836 | Bone marrow | TEX-HIST1H3H-WT-Rx_cells | 868 | 5 | 415 | 35 | 2 | 33 | 0 | LINC01336,GCNT4 |
| SE_02_104000455 | chr5:75046400-75063650 |
Sample_02_1040 | Peripheral blood | CD4+ cells_CTCL1126 | 455 | 11 | 471 | 35 | 2 | 34 | 0 | LINC01336,GCNT4 |
| SE_02_148200472 | chr5:75046425-75057641 |
Sample_02_1482 | Bone | POE | 472 | 3 | 323 | 27 | 0 | 30 | 0 | LINC01336,GCNT4 |
| SE_02_068500280 | chr5:75047517-75054901 |
Sample_02_0685 | Lung | NCI-H1048_no infection | 280 | 1 | 208 | 18 | 0 | 29 | 0 | LINC01336,GCNT4 |
| SE_02_147600459 | chr5:75047707-75058551 |
Sample_02_1476 | Bone | EW-1 | 459 | 5 | 301 | 26 | 1 | 30 | 0 | LINC01336,GCNT4 |
| SE_02_070200312 | chr5:75048819-75057678 |
Sample_02_0702 | Bone | David_TC71 | 312 | 5 | 240 | 18 | 0 | 29 | 0 | LINC01336,GCNT4 |
| SE_02_034800244 | chr5:75049521-75092373 |
Sample_02_0348 | Peripheral blood | CUTLL1_wild-type | 244 | 6 | 1033 | 80 | 6 | 59 | 157 | ANKRD31,GCNT4 |
| SE_02_034900204 | chr5:75049708-75091002 |
Sample_02_0349 | Peripheral blood | CUTLL1_dimer-mutant | 204 | 7 | 989 | 76 | 6 | 44 | 120 | ANKRD31,GCNT4 |
| SE_00_004500219 | chr5:75049860-75061976 |
Sample_00_0045 | Thymus | thymus | 219 | 2 | 325 | 23 | 2 | 26 | 0 | GCNT4,ANKRD31 |
| SE_02_003400271 | chr5:75049960-75063697 |
Sample_02_0034 | Peripheral blood | CUTLL1_GSI | 271 | 4 | 362 | 23 | 2 | 27 | 0 | GCNT4,ANKRD31 |
| SE_02_157001397 | chr5:75050011-75057784 |
Sample_02_1570 | iPSCs | EiPSC | 1397 | 3 | 218 | 15 | 1 | 23 | 0 | LINC01336,GCNT4 |
| SE_02_156701315 | chr5:75050190-75057859 |
Sample_02_1567 | iPSCs | CiPSC | 1315 | 3 | 216 | 15 | 1 | 23 | 0 | LINC01336,GCNT4 |
| SE_02_104701330 | chr5:75050334-75064037 |
Sample_02_1047 | Peripheral blood | CD4+ cells_CTCL1181 | 1330 | 5 | 354 | 23 | 2 | 27 | 0 | LINC01336,GCNT4 |
| SE_02_003100493 | chr5:75050564-75079439 |
Sample_02_0031 | Haematopoietic and lymphoid tissue blood | Jurkat | 493 | 4 | 690 | 50 | 4 | 31 | 57 | ANKRD31,GCNT4 |
| SE_02_055700505 | chr5:75050698-75057235 |
Sample_02_0557 | iPSCs | WT hiPSC#1 | 505 | 1 | 187 | 14 | 0 | 23 | 0 | LINC01336,GCNT4 |
| SE_02_002600354 | chr5:75051070-75061768 |
Sample_02_0026 | Blood | CD4donorE | 354 | 4 | 292 | 22 | 2 | 23 | 0 | GCNT4 |
| SE_02_002200743 | chr5:75051125-75060747 |
Sample_02_0022 | Blood | CD8donorA | 743 | 5 | 264 | 20 | 1 | 23 | 0 | GCNT4 |
| SE_02_005800532 | chr5:75051150-75063743 |
Sample_02_0058 | Haematopoietic and lymphoid tissue blood | WT/Jurkat-11bp | 532 | 2 | 338 | 23 | 2 | 24 | 0 | GCNT4,ANKRD31 |
| SE_02_130000289 | chr5:75051176-75066247 |
Sample_02_1300 | Blood | KARPAS-45 | 289 | 3 | 373 | 26 | 2 | 24 | 0 | LINC01336,GCNT4 |
| SE_02_010600542 | chr5:75052054-75054183 |
Sample_02_0106 | Skin | NHEK_M | 542 | 1 | 68 | 7 | 0 | 14 | 0 | GCNT4,ANKRD31 |
| SE_02_059100527 | chr5:75052170-75061311 |
Sample_02_0591 | PBMCs | adult CD4+CD25-CD45RA+CD27+ naive T cells | 527 | 5 | 255 | 22 | 2 | 20 | 0 | LINC01336,GCNT4 |
| SE_02_063900144 | chr5:75052199-75061356 |
Sample_02_0639 | Blood | T-ALL PDX | 144 | 5 | 254 | 22 | 2 | 20 | 0 | LINC01336,GCNT4 |
| SE_00_002400917 | chr5:75052252-75057215 |
Sample_00_0024 | Embryo | mesendoderm | 917 | 1 | 153 | 14 | 0 | 17 | 0 | GCNT4,ANKRD31 |
| SE_02_126200360 | chr5:75052304-75054646 |
Sample_02_1262 | Bone | Im-GCT-3504_G34W | 360 | 1 | 79 | 8 | 0 | 16 | 0 | LINC01336,GCNT4 |
Genomic distribution of SEs associated with GCNT4