SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000280916
Gene: FOXCUT Gene type: lncRNA
Strand: + External links:
Genomic region: chr6:1601654-1607354 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_118601056 chr6:1553834-1581376 Sample_02_1186 Brain GBM15 1056 6 801 40 2 62 0 FOXC1,FOXCUT
SE_02_152200520 chr6:1559185-1594296 Sample_02_1522 Skin A375 RTKi 520 8 1107 44 3 75 0 FOXC1,FOXCUT
SE_02_057000856 chr6:1560815-1580350 Sample_02_0570 Brain LN229_10_mM_glucose 856 7 551 28 2 56 0 FOXC1,FOXCUT
SE_02_094200253 chr6:1561564-1580088 Sample_02_0942 Brain LN229 253 5 522 26 2 56 0 FOXC1,FOXCUT
SE_02_085700803 chr6:1572171-1577534 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 803 1 174 8 2 32 0 FOXC1,FOXCUT
SE_02_142600173 chr6:1607512-1627992 Sample_02_1426 Shoulder fibroblast_341 173 8 522 4 1 297 917 GMDS,FOXC1,FOXCUT
SE_02_142700170 chr6:1607520-1628658 Sample_02_1427 Shoulder fibroblast_343 170 6 539 4 1 304 917 GMDS,FOXC1,FOXCUT
SE_02_064700030 chr6:1607624-1637750 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 30 7 832 14 2 350 917 GMDS,FOXC1,FOXCUT
SE_02_065200110 chr6:1607770-1637652 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 110 9 826 14 2 346 917 GMDS,FOXC1,FOXCUT
SE_02_142800230 chr6:1607789-1628443 Sample_02_1428 Shoulder fibroblast_316 230 5 526 4 1 297 917 GMDS,FOXC1,FOXCUT
SE_02_064600083 chr6:1607863-1625598 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 83 10 451 4 1 266 917 GMDS,FOXC1,FOXCUT
SE_00_005100905 chr6:1607899-1625344 Sample_00_0051 Adrenal gland adrenal gland 30y 905 12 442 4 1 266 917 GMDS,FOXC1,FOXCUT
SE_02_099200337 chr6:1608368-1631934 Sample_02_0992 Mammary gland MDA-MB-231_Par 337 5 638 9 1 324 917 GMDS,FOXC1,FOXCUT
SE_02_099000809 chr6:1608533-1614841 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 809 2 146 0 0 195 671 FOXC1,FOXCUT
SE_02_094801045 chr6:1608758-1642572 Sample_02_0948 Pharyng Detroit562 1045 6 937 19 2 349 917 GMDS,FOXC1,FOXCUT
SE_02_142500131 chr6:1608801-1626242 Sample_02_1425 Shoulder fibroblast_384 131 7 449 4 1 267 917 GMDS,FOXC1,FOXCUT
SE_02_126400346 chr6:1608823-1617064 Sample_02_1264 Bone Im-GCT-4072_G34W KO 346 2 195 2 0 218 671 FOXC1,FOXCUT
SE_02_065100086 chr6:1608841-1625420 Sample_02_0651 Tracheobronchial epithelial HTBE_H3N2_18h 86 4 425 4 1 266 917 GMDS,FOXC1,FOXCUT
SE_02_126500457 chr6:1608848-1617716 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 457 2 213 3 0 219 671 FOXC1,FOXCUT
SE_02_126900310 chr6:1608861-1615799 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 310 1 166 0 0 204 671 FOXC1,FOXCUT
SE_02_126100037 chr6:1608898-1615737 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 37 2 162 0 0 202 671 FOXC1,FOXCUT
SE_02_126600255 chr6:1608907-1616958 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 255 2 192 2 0 215 671 FOXC1,FOXCUT
SE_02_126000108 chr6:1608950-1615791 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 108 2 164 0 0 202 671 FOXC1,FOXCUT
SE_02_135300825 chr6:1608994-1612555 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 825 1 76 0 0 123 510 FOXC1,FOXCUT
SE_02_135400922 chr6:1608997-1613233 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 922 1 90 0 0 154 554 FOXC1,FOXCUT
SE_02_126301369 chr6:1608998-1615641 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1369 1 157 0 0 201 671 FOXC1,FOXCUT
SE_02_126700878 chr6:1609012-1615786 Sample_02_1267 Bone Im-GCT-4072_G34W 878 2 162 0 0 202 671 FOXC1,FOXCUT
SE_02_126200114 chr6:1609016-1615795 Sample_02_1262 Bone Im-GCT-3504_G34W 114 2 163 0 0 202 671 FOXC1,FOXCUT
SE_02_135200729 chr6:1609044-1613043 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 729 1 84 0 0 151 536 FOXC1,FOXCUT
SE_02_136600757 chr6:1609061-1614921 Sample_02_1366 Pancreas BxPC3-untreated 757 3 133 0 0 193 671 FOXC1,FOXCUT
SE_02_125900169 chr6:1609121-1615778 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 169 1 158 0 0 202 671 FOXC1,FOXCUT
SE_02_141600361 chr6:1609166-1626259 Sample_02_1416 Brain SF9402 361 2 441 4 1 265 917 GMDS,FOXC1,FOXCUT
SE_02_153900676 chr6:1609848-1642132 Sample_02_1539 Nasopharyngeal C666-1 676 7 908 18 2 341 917 GMDS,FOXC1,FOXCUT
SE_02_095000277 chr6:1609908-1635890 Sample_02_0950 Umbilical vein HUVEC_WT 277 12 730 13 2 323 917 GMDS,FOXC1,FOXCUT
SE_02_044100827 chr6:1609925-1636102 Sample_02_0441 Bone M112 827 6 735 13 2 324 917 GMDS,FOXC1,FOXCUT
SE_02_065000358 chr6:1609929-1625627 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 358 4 414 4 1 251 917 GMDS,FOXC1,FOXCUT
SE_02_064900198 chr6:1609931-1625583 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 198 6 412 4 1 251 917 GMDS,FOXC1,FOXCUT
SE_02_065700034 chr6:1609942-1625259 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 34 7 401 4 1 251 917 GMDS,FOXC1,FOXCUT
SE_02_064400111 chr6:1609954-1637405 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 111 10 779 14 2 327 917 GMDS,FOXC1,FOXCUT
SE_02_086700701 chr6:1609967-1626133 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 701 12 426 4 1 251 917 GMDS,FOXC1,FOXCUT
SE_02_127901144 chr6:1609969-1625732 Sample_02_1279 Bone Mesenchymal stem cells 1144 2 415 4 1 251 917 GMDS,FOXC1,FOXCUT
SE_02_130900983 chr6:1609974-1625574 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 983 4 409 4 1 251 917 GMDS,FOXC1,FOXCUT
SE_02_083900949 chr6:1610509-1627246 Sample_02_0839 Embryo hNPCs_K755R/+ 949 7 450 4 1 259 836 GMDS,FOXC1,FOXCUT
SE_02_151800385 chr6:1613911-1626213 Sample_02_1518 Umbilical vein HUVEC_Scr 385 9 334 4 1 82 291 GMDS,FOXC1,FOXCUT
Genomic distribution of SEs associated with FOXCUT
Genome Browser

The strength of the tissue affected by the gene

Expression of FOXCUT

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)