SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000130475
Gene: FCHO1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:17747718-17788568 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_108301123 chr19:17677916-17706750 Sample_02_1083 Macula macula 1123 4 861 44 1 46 143 UNC13A,FCHO1,MAP1S
SE_02_104601987 chr19:17700423-17741869 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1987 6 1281 114 1 0 1561 MAP1S,FCHO1,UNC13A
SE_02_095001188 chr19:17716837-17729432 Sample_02_0950 Umbilical vein HUVEC_WT 1188 6 397 45 1 0 1283 MAP1S,FCHO1,UNC13A
SE_02_083101129 chr19:17717278-17723288 Sample_02_0831 Umblical vein HUVECs_TNF0min 1129 3 165 21 0 0 385 MAP1S,FCHO1,UNC13A
SE_02_104801747 chr19:17721896-17741891 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1747 6 621 65 1 0 1176 MAP1S,FCHO1,UNC13A
SE_02_062200630 chr19:17723138-17755982 Sample_02_0622 Blood EOL1_Naive 630 18 977 111 3 26 1700 FCHO1,MAP1S,UNC13A,B3GNT3
SE_02_133100960 chr19:17736391-17765612 Sample_02_1331 Blood Molm13_CTRL 960 8 795 78 3 44 715 FCHO1,MAP1S,UNC13A,B3GNT3
SE_02_153900420 chr19:17737292-17798572 Sample_02_1539 Nasopharyngeal C666-1 420 20 1750 167 10 136 3017 FCHO1,B3GNT3,JAK3,MAP1S,INSL3,UNC13A
SE_02_072900325 chr19:17737464-17778972 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 325 11 1142 115 6 93 1891 FCHO1,MAP1S,INSL3,UNC13A,B3GNT3
SE_02_072800549 chr19:17737594-17779029 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 549 9 1141 115 6 93 1902 FCHO1,MAP1S,INSL3,UNC13A,B3GNT3
SE_02_073300479 chr19:17737918-17784419 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 479 10 1292 128 7 119 2355 FCHO1,MAP1S,INSL3,UNC13A,B3GNT3
SE_02_073200667 chr19:17737946-17755948 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 667 5 474 60 2 26 524 FCHO1,MAP1S,UNC13A,B3GNT3
SE_02_073000660 chr19:17738030-17777374 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 660 9 1097 111 6 87 1624 FCHO1,MAP1S,INSL3,UNC13A,B3GNT3
SE_02_075000465 chr19:17738057-17779381 Sample_02_0750 Lymphoma Rec-1_GSI 465 16 1143 117 6 93 1915 FCHO1,MAP1S,INSL3,UNC13A,B3GNT3
SE_02_073100408 chr19:17738097-17778975 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 408 9 1130 115 6 93 1892 FCHO1,MAP1S,INSL3,UNC13A,B3GNT3
SE_02_075100474 chr19:17738341-17784450 Sample_02_0751 Lymphoma Rec-1_WO 474 15 1289 129 7 119 2358 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_078100777 chr19:17738562-17789955 Sample_02_0781 Lymphoma Pfeiffer_DMSO 777 18 1490 132 7 134 2890 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_121800699 chr19:17738748-17759317 Sample_02_1218 Bone marrow Daudi 699 7 556 62 2 37 524 FCHO1,MAP1S,B3GNT3
SE_02_078400699 chr19:17738781-17777442 Sample_02_0784 Blood OSU-CLL 699 13 1081 109 6 87 1624 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_154100661 chr19:17743482-17799528 Sample_02_1541 Nasopharyngeal HNE1 661 10 1622 157 11 136 3017 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_121300337 chr19:17747634-17780022 Sample_02_1213 Brain GBM31 337 11 921 91 6 89 1894 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_117300226 chr19:17747703-17784269 Sample_02_1173 Brain GBM01 226 14 1039 101 7 115 2278 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_120500613 chr19:17747717-17780074 Sample_02_1205 Brain NB3 613 13 919 91 6 89 1861 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_120300320 chr19:17747733-17779564 Sample_02_1203 Brain NB1 320 9 905 91 6 89 1851 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_120400463 chr19:17747738-17779964 Sample_02_1204 Brain NB2 463 8 915 91 6 89 1850 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_119600851 chr19:17748895-17780043 Sample_02_1196 Brain GBM32 851 15 893 88 5 87 1773 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_121100820 chr19:17753312-17766737 Sample_02_1211 Brain GBM21 820 6 378 23 1 31 483 FCHO1,MAP1S,B3GNT3
SE_02_100400131 chr19:17753393-17759056 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 131 5 170 13 0 17 242 FCHO1,MAP1S,B3GNT3
SE_02_100000298 chr19:17753464-17766811 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 298 8 377 22 1 32 492 FCHO1,MAP1S,B3GNT3
SE_02_082600391 chr19:17753579-17817176 Sample_02_0826 Stomach gastric tumor 391 27 1894 169 13 132 3515 FCHO1,INSL3,B3GNT3,JAK3,SNORA68,RPL18A,MAP1S
SE_02_101400241 chr19:17753730-17758494 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 241 6 138 9 0 17 242 FCHO1,MAP1S,B3GNT3
SE_02_101300341 chr19:17753855-17779364 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 341 12 734 63 4 73 1633 FCHO1,MAP1S,B3GNT3,INSL3
SE_02_104800381 chr19:17754448-17808487 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 381 19 1597 142 13 120 2870 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_100100059 chr19:17754534-17766512 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 59 2 333 18 1 22 347 FCHO1,MAP1S,B3GNT3
SE_02_113100742 chr19:17754872-17798532 Sample_02_1131 Pancreas T3M4 wt 742 12 1292 108 8 114 2588 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_100700170 chr19:17755044-17778579 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 170 8 683 57 4 65 1314 FCHO1,MAP1S,B3GNT3,INSL3
SE_01_011400413 chr19:17757274-17798388 Sample_01_0114 Colon HCT116_encode 413 11 1212 103 8 103 2493 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_102900542 chr19:17764142-17800403 Sample_02_1029 Colon HCT116 542 18 1107 109 9 94 2384 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_047800447 chr19:17764794-17799787 Sample_02_0478 Colon normal colon mucosa 447 9 1055 102 9 92 2302 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_136700312 chr19:17765305-17799231 Sample_02_1367 Pancreas Capan1-untreated 312 8 1014 97 8 92 2302 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_125800244 chr19:17765388-17808487 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 244 9 1287 124 12 98 2504 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_047700554 chr19:17765393-17799829 Sample_02_0477 Colon intestinal epithelial organoids_139a 554 8 1035 100 9 92 2302 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_147000446 chr19:17765452-17804879 Sample_02_1470 Umbilical Vein H441 446 5 1176 116 11 92 2302 FCHO1,B3GNT3,JAK3,MAP1S,INSL3
SE_02_087200455 chr19:17774762-17798164 Sample_02_0872 Colon HCT116_siCtrl-5FU 455 7 701 56 4 65 1794 FCHO1,B3GNT3,JAK3,INSL3
SE_02_123000311 chr19:17778453-17799464 Sample_02_1230 Lung PC9 311 6 633 54 5 49 1281 FCHO1,B3GNT3,JAK3,INSL3
SE_02_081900982 chr19:17778514-17803778 Sample_02_0819 Ovary Mucinous ovarian cancer 982 6 769 71 8 49 1264 FCHO1,B3GNT3,JAK3,INSL3
SE_02_088400320 chr19:17788801-17799931 Sample_02_0884 Colon LoVo 320 1 308 42 5 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_00_004200626 chr19:17788952-17799436 Sample_00_0042 Stomach stomach_30y 626 4 284 37 4 2 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_070300546 chr19:17789005-17799544 Sample_02_0703 Pancreas PATU8988S WT 546 2 285 37 4 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_035500423 chr19:17789105-17799195 Sample_02_0355 Colon HCT15 423 2 272 37 4 2 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_071800498 chr19:17789252-17799735 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 498 4 292 39 5 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_072200457 chr19:17789502-17799261 Sample_02_0722 Pancreas PATU8988S_TP63dN_DOX 457 6 265 36 4 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_002100226 chr19:17789515-17807647 Sample_02_0021 Colon V429 226 3 512 62 8 2 153 B3GNT3,INSL3,FCHO1,JAK3
SE_02_137100291 chr19:17789601-17799640 Sample_02_1371 Pancreas Patu899S-untreated 291 3 274 36 4 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_024000400 chr19:17789607-17798987 Sample_02_0240 Colon V429_2 400 3 250 33 3 2 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_136500566 chr19:17789787-17807858 Sample_02_1365 Pancreas AsPC1-untreated 566 10 510 62 8 2 191 B3GNT3,FCHO1,JAK3,INSL3
SE_01_007900839 chr19:17789849-17799260 Sample_01_0079 Peyers patch Peyers-patch 839 2 252 35 4 2 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_070500617 chr19:17789886-17807713 Sample_02_0705 Pancreas AsPC1 WT 617 4 501 61 8 2 162 B3GNT3,FCHO1,JAK3,INSL3
SE_00_005800351 chr19:17790008-17798366 Sample_00_0058 Stomach stomach 34y 351 5 221 29 3 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_071300922 chr19:17790051-17807612 Sample_02_0713 Pancreas BxPC3_sgTP63 922 4 485 59 8 2 143 B3GNT3,FCHO1,JAK3,INSL3
SE_01_009900746 chr19:17790108-17798846 Sample_01_0099 Colon transverse colon 746 5 226 30 3 2 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_125400676 chr19:17790670-17799734 Sample_02_1254 Bladder Bladder tumor Basal1 676 3 248 33 5 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_136100831 chr19:17790748-17799678 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 831 4 240 32 5 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_136600861 chr19:17790769-17799246 Sample_02_1366 Pancreas BxPC3-untreated 861 6 223 30 4 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_136200865 chr19:17790806-17800768 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 865 3 281 43 5 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_00_004900324 chr19:17790828-17800428 Sample_00_0049 Small intestine small intestine 30y 324 5 270 41 5 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_071000666 chr19:17790893-17799158 Sample_02_0710 Pancreas hN34_organoid 666 4 217 30 4 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_071100433 chr19:17790908-17807099 Sample_02_0711 Pancreas hN35_organoid 433 5 451 56 8 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_00_003600447 chr19:17791226-17799892 Sample_00_0036 Small intestine small-intestine_108days 447 2 235 33 5 0 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_071201335 chr19:17791519-17799518 Sample_02_0712 Pancreas BxPC3_sgNEG 1335 2 204 24 4 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_102500912 chr19:17794031-17799732 Sample_02_1025 Esophagus KYSE150 912 1 152 20 3 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_00_002000489 chr19:17794047-17800145 Sample_00_0020 Large intestine large-intestine_108d 489 1 169 25 3 0 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_047500978 chr19:17794479-17799243 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 978 1 116 17 2 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_105400766 chr19:17794572-17799797 Sample_02_1054 Esophagus SKGT4 766 2 138 21 3 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_137000481 chr19:17794710-17800034 Sample_02_1370 Pancreas Patu8902-untreated 481 2 140 23 3 0 127 B3GNT3,FCHO1,JAK3,INSL3
SE_02_019200079 chr19:17794719-17798574 Sample_02_0192 Stomach MKN45 79 2 90 14 1 0 127 B3GNT3,INSL3,FCHO1,JAK3
SE_02_019100136 chr19:17795048-17798469 Sample_02_0191 Stomach SNU719 136 2 81 13 1 0 87 B3GNT3,INSL3,FCHO1,JAK3
SE_02_070400351 chr19:17795130-17799418 Sample_02_0704 Pancreas HPAFII WT 351 3 104 15 2 0 64 B3GNT3,FCHO1,JAK3,INSL3
Genomic distribution of SEs associated with FCHO1
Genome Browser

The strength of the tissue affected by the gene

Expression of FCHO1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)