SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000012232
Gene: EXTL3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr8:28600469-28755599 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_068700379 chr8:28646801-28673657 Sample_02_0687 Lung NCI-H146_no infection 379 8 741 33 1 28 0 EXTL3,EXTL3-AS1
SE_02_129100236 chr8:28654140-28670668 Sample_02_1291 Lung NCI-H889_p8-15 236 8 437 24 1 27 0 EXTL3,EXTL3-AS1
SE_02_129000411 chr8:28654599-28660942 Sample_02_1290 Lung NCI-H69_p8-15 411 2 171 8 0 15 0 EXTL3,EXTL3-AS1
SE_02_085700096 chr8:28655572-28729803 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 96 12 1950 74 3 208 1215 EXTL3,EXTL3-AS1
SE_02_141000211 chr8:28656662-28730827 Sample_02_1410 Brain GSC6 211 14 1946 70 3 203 1215 EXTL3,EXTL3-AS1
SE_02_079800347 chr8:28656896-28678478 Sample_02_0798 Brain 1919 347 5 613 23 3 30 0 EXTL3,EXTL3-AS1
SE_02_067401218 chr8:28657086-28678311 Sample_02_0674 Endometrium E1_FA 1218 9 604 23 3 30 0 EXTL3,EXTL3-AS1
SE_02_089800945 chr8:28657525-28728086 Sample_02_0898 Heart left ventricle_LV1356 945 15 1855 69 3 200 1215 EXTL3,EXTL3-AS1
SE_02_149201366 chr8:28673430-28751183 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1366 15 2027 72 4 221 1539 EXTL3,EXTL3-AS1
SE_02_063200234 chr8:28692936-28716304 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 234 7 564 23 0 81 864 EXTL3,EXTL3-AS1
SE_02_063300214 chr8:28693073-28728525 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 214 8 887 32 0 160 1215 EXTL3,EXTL3-AS1
SE_02_064801378 chr8:28693180-28714256 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1378 10 510 22 0 60 755 EXTL3,EXTL3-AS1
SE_02_074700986 chr8:28693186-28728489 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 986 12 884 31 0 160 1215 EXTL3,EXTL3-AS1
SE_02_090401522 chr8:28693214-28730882 Sample_02_0904 Heart left ventricle_DCM_LV1028 1522 9 947 32 0 161 1215 EXTL3,EXTL3-AS1
SE_02_101700915 chr8:28693267-28729274 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 915 8 902 32 0 161 1215 EXTL3,EXTL3-AS1
SE_02_101600913 chr8:28693789-28714585 Sample_02_1016 Embryo H9_Mesendoderm_24h 913 4 501 23 0 55 755 EXTL3,EXTL3-AS1
SE_02_064501091 chr8:28694798-28713781 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1091 5 466 22 0 39 755 EXTL3,EXTL3-AS1
SE_02_097600425 chr8:28698680-28713825 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 425 9 386 17 0 35 450 EXTL3,EXTL3-AS1
SE_02_097200268 chr8:28699151-28726883 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 268 9 715 24 0 134 910 EXTL3,EXTL3-AS1
SE_02_129100313 chr8:28699274-28712325 Sample_02_1291 Lung NCI-H889_p8-15 313 7 338 16 0 34 420 EXTL3,EXTL3-AS1
SE_02_079800012 chr8:28699425-28727964 Sample_02_0798 Brain 1919 12 9 739 26 0 134 910 EXTL3,EXTL3-AS1
SE_02_097300585 chr8:28699884-28714280 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 585 6 367 17 0 35 427 EXTL3,EXTL3-AS1
SE_02_117700405 chr8:28699889-28713740 Sample_02_1177 Brain GBM05 405 1 351 17 0 35 427 EXTL3,EXTL3-AS1
SE_02_092500376 chr8:28700019-28730859 Sample_02_0925 Heart fetal heart_PCW17_12570 376 11 793 26 0 136 863 EXTL3,EXTL3-AS1
SE_02_096800455 chr8:28700161-28713738 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 455 3 340 15 0 35 391 EXTL3,EXTL3-AS1
SE_02_119300618 chr8:28700161-28714178 Sample_02_1193 Brain GBM27 618 6 353 15 0 35 391 EXTL3,EXTL3-AS1
SE_02_136600756 chr8:28700211-28714248 Sample_02_1366 Pancreas BxPC3-untreated 756 9 351 15 0 35 388 EXTL3,EXTL3-AS1
SE_02_092101061 chr8:28700212-28730633 Sample_02_0921 Heart embryonic heart_CS22 1061 9 782 25 0 136 848 EXTL3,EXTL3-AS1
SE_02_063400371 chr8:28700225-28716370 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 371 5 399 16 0 57 503 EXTL3,EXTL3-AS1
SE_02_080000339 chr8:28700313-28715022 Sample_02_0800 Brain 3679 339 5 366 15 0 40 371 EXTL3,EXTL3-AS1
SE_02_095300326 chr8:28700331-28730849 Sample_02_0953 Brain H3.3K27M_1840 326 8 786 24 0 136 830 EXTL3,EXTL3-AS1
SE_02_119700927 chr8:28700353-28712511 Sample_02_1197 Brain GBM33 927 2 309 13 0 34 336 EXTL3,EXTL3-AS1
SE_02_117400443 chr8:28700381-28730820 Sample_02_1174 Brain GBM02 443 13 784 24 0 135 826 EXTL3,EXTL3-AS1
SE_02_156001166 chr8:28700382-28720389 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1166 4 506 17 0 131 826 EXTL3,EXTL3-AS1
SE_02_084001182 chr8:28700430-28715175 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1182 6 364 15 0 40 357 EXTL3,EXTL3-AS1
SE_02_079900407 chr8:28700709-28714244 Sample_02_0799 Brain MESMN1 407 4 342 14 0 25 308 EXTL3,EXTL3-AS1
SE_02_079500509 chr8:28700795-28714204 Sample_02_0795 Brain 1953 509 4 340 14 0 25 289 EXTL3,EXTL3-AS1
SE_02_098000353 chr8:28700825-28703617 Sample_02_0980 Brain BT245 353 1 76 0 0 15 256 EXTL3,EXTL3-AS1
SE_02_141900343 chr8:28700856-28714250 Sample_02_1419 Brain hNSC 343 7 339 14 0 25 282 EXTL3,EXTL3-AS1
SE_02_065000865 chr8:28700916-28713323 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 865 3 313 14 0 25 249 EXTL3,EXTL3-AS1
SE_02_126000592 chr8:28700951-28713714 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 592 4 324 14 0 25 269 EXTL3,EXTL3-AS1
SE_02_125900877 chr8:28701000-28708534 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 877 5 203 6 0 20 233 EXTL3,EXTL3-AS1
SE_02_128300448 chr8:28701786-28714242 Sample_02_1283 Lung NCI-H2107_p8-15 448 4 317 14 0 17 45 EXTL3,EXTL3-AS1
SE_02_074000896 chr8:28702639-28714983 Sample_02_0740 Muscle RH3 896 5 307 15 0 15 30 EXTL3,EXTL3-AS1
SE_02_108000670 chr8:28702667-28714318 Sample_02_1080 Muscle JR1 shCtrl 670 10 294 15 0 11 30 EXTL3,EXTL3-AS1
SE_02_130901109 chr8:28705347-28714849 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1109 4 227 14 0 9 30 EXTL3,EXTL3-AS1
Genomic distribution of SEs associated with EXTL3
Genome Browser

The strength of the tissue affected by the gene

Expression of EXTL3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)