SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000146904
Gene: EPHA1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:143390289-143408856 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002401113 chr7:143361842-143383327 Sample_00_0024 Embryo mesendoderm 1113 3 525 41 1 165 977 FAM131B,ZYX,EPHA1,CLCN1,LOC285965
SE_02_035800611 chr7:143367222-143383471 Sample_02_0358 Colon LS180 611 2 415 33 1 103 684 ZYX,FAM131B,LOC285965,EPHA1
SE_02_096300325 chr7:143367537-143387484 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 325 8 540 47 1 120 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_127600269 chr7:143367659-143385305 Sample_02_1276 Prostate PC3_GSK126 269 13 455 37 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_158000297 chr7:143367767-143385215 Sample_02_1580 Renal 786-O 297 4 449 36 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_132000310 chr7:143368258-143383871 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 310 6 398 29 1 103 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_127400270 chr7:143368270-143384812 Sample_02_1274 Prostate PC3_DMSO 270 4 424 32 1 109 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_127500524 chr7:143368331-143386669 Sample_02_1275 Prostate PC3_Vorinostat 524 14 489 39 1 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_126700658 chr7:143368342-143382648 Sample_02_1267 Bone Im-GCT-4072_G34W 658 5 355 27 1 93 485 ZYX,FAM131B,EPHA1-AS1,EPHA1,MIR6892
SE_02_077101208 chr7:143368397-143385194 Sample_02_0771 Ovary OVCA429_shGRHL2 1208 7 433 33 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_126300914 chr7:143368456-143385088 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 914 5 431 33 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_097000362 chr7:143368507-143385173 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 362 8 432 33 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_01_004400325 chr7:143369488-143382515 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 325 2 322 23 1 89 456 ZYX,FAM131B,LOC285965,EPHA1
SE_02_017600329 chr7:143369682-143383626 Sample_02_0176 Peripheral blood LOUCY 329 1 356 24 1 103 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_101600980 chr7:143369706-143383641 Sample_02_1016 Embryo H9_Mesendoderm_24h 980 2 356 24 1 103 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_050200094 chr7:143371146-143387650 Sample_02_0502 Blood HL-60_PMA_16h 94 5 453 36 1 120 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_01_002400679 chr7:143371439-143389999 Sample_01_0024 Blood CD14-positive-monocyte 679 3 519 40 1 147 1009 ZYX,FAM131B,LOC285965,EPHA1
SE_02_117900222 chr7:143371574-143386904 Sample_02_1179 Brain GBM08 222 5 411 33 1 120 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_134500222 chr7:143371602-143386927 Sample_02_1345 Leukophereses leukophereses_p358 222 6 411 33 1 120 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_025600512 chr7:143371615-143389427 Sample_02_0256 Peripheral blood MV411 512 2 498 38 1 140 955 ZYX,FAM131B,LOC285965,EPHA1
SE_01_005200412 chr7:143371620-143387433 Sample_01_0052 Blood neutrophil 412 3 427 35 1 120 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_050100194 chr7:143371662-143386414 Sample_02_0501 Blood HL-60_CTRL 194 8 395 30 1 116 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_095800432 chr7:143371695-143384852 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 432 7 337 25 1 110 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_121200702 chr7:143371720-143386719 Sample_02_1212 Brain GBM30 702 4 402 31 1 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_096500444 chr7:143371758-143385316 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 444 6 348 26 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_058100319 chr7:143371763-143387158 Sample_02_0581 Blood MOLM13_empty_HG 319 4 415 34 1 120 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_121100475 chr7:143371774-143385223 Sample_02_1211 Brain GBM21 475 5 346 26 1 114 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_132200299 chr7:143371791-143383363 Sample_02_1322 Connective Tissue HT1080_WT 299 4 295 21 1 103 654 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_079400149 chr7:143371791-143383391 Sample_02_0794 Brain 1552 149 5 295 21 1 103 664 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_109800576 chr7:143371844-143387198 Sample_02_1098 Blood THP1_DMSO_noPMA 576 8 415 33 1 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_010000527 chr7:143371942-143385851 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 527 3 364 27 1 113 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_025500358 chr7:143371959-143389251 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 358 3 488 37 1 139 955 ZYX,FAM131B,LOC285965,EPHA1
SE_02_057500451 chr7:143372007-143387149 Sample_02_0575 Blood MOLM13_sgLKB1e2 451 6 407 33 1 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_057800551 chr7:143372010-143387245 Sample_02_0578 Blood MOLM-13_sgSIK3e4 551 7 410 33 1 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_135000079 chr7:143372172-143387507 Sample_02_1350 Leukophereses leukophereses_p456 79 4 419 34 1 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_058200335 chr7:143372227-143387326 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 335 4 410 32 0 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_134200230 chr7:143372265-143386009 Sample_02_1342 Blood NB4 230 6 366 26 0 113 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_057400684 chr7:143372303-143387135 Sample_02_0574 Blood MOLM-13_sgNeg2 684 6 402 32 0 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_138800857 chr7:143372350-143382386 Sample_02_1388 Peripheral blood JB6_ALK+ 857 3 241 17 0 87 409 ZYX,FAM131B,EPHA1-AS1,EPHA1,MIR6892
SE_02_099500541 chr7:143372360-143386611 Sample_02_0995 Blood MOLM-13_empty vector 541 10 388 29 0 118 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_117500314 chr7:143372380-143385257 Sample_02_1175 Brain GBM03 314 4 335 24 0 113 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_132100431 chr7:143372384-143383906 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 431 4 296 19 0 102 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_134900377 chr7:143372393-143383248 Sample_02_1349 Leukophereses leukophereses_p411 377 3 278 19 0 101 622 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_099300484 chr7:143372397-143387294 Sample_02_0993 Blood MOLM-13_empty 484 8 406 32 0 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_057700444 chr7:143372477-143387205 Sample_02_0577 Blood MOLM13_empty 444 4 402 32 0 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_099400519 chr7:143372497-143387765 Sample_02_0994 Blood MOLM13_SIK3TQ 519 13 424 33 0 119 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_131900103 chr7:143372576-143386084 Sample_02_1319 Connective Tissue HT1080_DDIT3 103 4 361 26 0 113 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_092700545 chr7:143373432-143386580 Sample_02_0927 Peripheral blood neutrophils_US 545 3 363 28 0 117 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_033700556 chr7:143374046-143388112 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 556 2 396 31 0 117 718 ZYX,FAM131B,LOC285965,EPHA1
SE_02_134800165 chr7:143374292-143386234 Sample_02_1348 Leukophereses leukophereses_p408 165 8 327 24 0 111 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_034700256 chr7:143374506-143385682 Sample_02_0347 Blood AML11 256 2 299 23 0 111 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_104500350 chr7:143374546-143386280 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 350 7 325 23 0 111 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_046100517 chr7:143374667-143387135 Sample_02_0461 Blood MV-4-11-B cells 517 6 345 29 0 117 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_134700247 chr7:143374684-143385592 Sample_02_1347 Leukophereses leukophereses_p401 247 4 289 22 0 111 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_017900449 chr7:143374730-143386903 Sample_02_0179 Urinary bladder T24 449 2 340 28 0 117 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_032300289 chr7:143374880-143385811 Sample_02_0323 Colon RKO 289 2 300 23 0 111 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_131300661 chr7:143374916-143386414 Sample_02_1313 Brain hMGLs_CD33_SNP 661 6 324 25 0 113 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_104400475 chr7:143375159-143387032 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 475 4 336 28 0 117 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_157900555 chr7:143375210-143383460 Sample_02_1579 Renal 786-M1A 555 2 221 15 0 100 681 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_059100410 chr7:143375259-143386485 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 410 2 314 24 0 115 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_059200169 chr7:143375293-143386538 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 169 2 317 24 0 115 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_082601670 chr7:143375501-143386262 Sample_02_0826 Stomach gastric tumor 1670 7 300 22 0 111 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_064200458 chr7:143375534-143383343 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 458 2 209 15 0 100 650 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_092901074 chr7:143375635-143385153 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1074 5 258 20 0 109 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_059300470 chr7:143375717-143386464 Sample_02_0593 Fetal spleenocytes fetal naive T cells 470 2 304 24 0 112 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_064300418 chr7:143375737-143383546 Sample_02_0643 Mammary gland MDA-MB-436 418 2 209 15 0 95 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_139300634 chr7:143375751-143385506 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 634 3 264 21 0 106 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_107100289 chr7:143375821-143388876 Sample_02_1071 Blood Jurkat_WT 289 2 385 31 0 129 885 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_083300508 chr7:143377644-143388169 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 508 1 309 25 0 100 731 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_083400677 chr7:143377758-143388195 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 677 1 302 23 0 100 734 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_045900250 chr7:143377889-143388242 Sample_02_0459 Blood ME-1_DMSO_6h 250 1 302 23 0 100 745 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_085700277 chr7:143378367-143387953 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 277 1 282 23 0 100 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_025800405 chr7:143378650-143383992 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 405 1 144 9 0 82 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_058400634 chr7:143378659-143384906 Sample_02_0584 Lung H1299 WT 634 3 170 13 0 93 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_085400112 chr7:143378686-143385272 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 112 1 178 14 0 93 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_108000896 chr7:143378766-143385336 Sample_02_1080 Muscle JR1 shCtrl 896 4 177 14 0 93 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_010700836 chr7:143378841-143386739 Sample_02_0107 Endometrium EEC16 836 1 230 19 0 98 694 ZYX,FAM131B,LOC285965,EPHA1
SE_02_119600456 chr7:143379205-143383532 Sample_02_1196 Brain GBM32 456 1 119 4 0 78 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_135900953 chr7:143379729-143383444 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 953 1 103 3 0 75 678 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_061100395 chr7:143379807-143387124 Sample_02_0611 Liposarcoma DDLPS_T1 395 1 217 16 0 92 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_138200516 chr7:143380058-143387718 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 516 3 238 16 0 91 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_104901606 chr7:143380319-143383932 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1606 1 106 2 0 74 694 ZYX,MIR6892,FAM131B,EPHA1-AS1,EPHA1
SE_02_104901786 chr7:143385685-143391099 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1786 1 203 14 0 43 526 ZYX,FAM131B,EPHA1-AS1,EPHA1,MIR6892
SE_02_032400192 chr7:143457146-143492317 Sample_02_0324 Colon SW48 192 5 875 84 1 79 192 LOC285965,TAS2R41,EPHA1,TAS2R60
Genomic distribution of SEs associated with EPHA1
Genome Browser

The strength of the tissue affected by the gene

Expression of EPHA1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)