SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000130159
Gene: ECSIT Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:11505929-11529172 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120500567 chr19:11441658-11484146 Sample_02_1205 Brain NB3 567 23 1275 96 1 242 3087 PRKCSH,ZNF653,ELAVL3,ECSIT,MIR7974,CCDC151,RGL3,EPOR
SE_02_121300347 chr19:11443752-11482939 Sample_02_1213 Brain GBM31 347 10 1180 91 0 227 2776 PRKCSH,ELAVL3,ECSIT,ZNF653,MIR7974,CCDC151,RGL3
SE_02_117300176 chr19:11444211-11483577 Sample_02_1173 Brain GBM01 176 15 1185 91 0 228 2868 PRKCSH,ZNF653,ELAVL3,ECSIT,MIR7974,CCDC151,RGL3
SE_02_110500972 chr19:11478282-11483053 Sample_02_1105 Brain NBL-S 972 2 107 5 0 81 235 ELAVL3,ECSIT,ZNF653,MIR7974,CCDC151,PRKCSH
SE_02_104700927 chr19:11481090-11522515 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 927 11 1237 99 3 190 1828 ECSIT,ZNF653,MIR7974,CNN1,CCDC151,PRKCSH,ELOF1,ELAVL3
SE_02_143301695 chr19:11486961-11514369 Sample_02_1433 Bone A673 STAG2 null 1695 5 800 67 2 144 1242 ECSIT,ZNF653,MIR7974,CNN1,ELOF1,ELAVL3
SE_02_021600965 chr19:11490721-11511355 Sample_02_0216 Skin NHEK_scramble 965 6 576 55 2 91 735 ECSIT,ZNF653,ELOF1,CNN1,ELAVL3
SE_02_104901477 chr19:11503540-11537369 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1477 11 890 61 2 79 1051 ECSIT,ZNF653,CNN1,MIR7974,ELOF1,ACP5,ELAVL3
SE_01_008300465 chr19:11527911-11553300 Sample_01_0083 Sigmoid colon sigmoid-colon 465 5 727 68 2 64 1153 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_01_008900437 chr19:11527963-11553592 Sample_01_0089 Transverse colon transverse-colon 437 3 734 68 2 64 1219 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_01_007400465 chr19:11528035-11553729 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 465 5 739 68 2 64 1246 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_01_007800466 chr19:11528079-11553748 Sample_01_0078 Heart left ventricle heart-left-ventricle 466 4 738 68 2 64 1248 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_02_074700919 chr19:11532095-11555784 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 919 18 701 64 2 72 1369 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_01_011000875 chr19:11534284-11551563 Sample_01_0110 Aorta thoracic aorta_37y 875 5 509 51 2 63 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_01_009301108 chr19:11534369-11552102 Sample_01_0093 Aorta ascending aorta 1108 3 526 55 2 64 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_01_009100418 chr19:11534528-11553353 Sample_01_0091 Uterus uterus 418 2 566 61 2 64 1005 CNN1,ELOF1,ECSIT,ZNF653,ACP5,ZNF627
SE_01_010200243 chr19:11534712-11552148 Sample_01_0102 Artery tibial artery 243 5 516 54 2 64 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_01_010900746 chr19:11534793-11553085 Sample_01_0109 Colon transverse colon_54y 746 8 550 59 2 64 937 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_01_009200887 chr19:11534832-11553504 Sample_01_0092 Vagina vagina 887 5 561 60 2 64 1047 CNN1,ELOF1,ECSIT,ZNF653,ACP5,ZNF627
SE_01_007700569 chr19:11534867-11553718 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 569 4 568 60 2 64 1083 CNN1,ELOF1,ECSIT,ZNF653,ACP5,ZNF627
SE_02_074600656 chr19:11535275-11553471 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 656 8 552 60 2 64 1038 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_02_074500354 chr19:11535527-11553636 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 354 5 552 60 2 64 1064 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_02_104602207 chr19:11535675-11571431 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2207 7 1006 88 2 72 1679 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_02_082601575 chr19:11535747-11568551 Sample_02_0826 Stomach gastric tumor 1575 7 917 87 2 72 1679 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_02_074400634 chr19:11535777-11551658 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 634 3 476 49 2 63 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_02_104700801 chr19:11551915-11592964 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 801 14 1134 95 2 9 1622 ACP5,ELOF1,ECSIT,ZNF653,ZNF627,CNN1
SE_02_078300410 chr19:11552899-11587452 Sample_02_0783 Blood MEC2 410 11 945 75 2 8 1613 ACP5,ELOF1,ECSIT,ZNF653,ZNF627,CNN1
SE_02_078400496 chr19:11554415-11587547 Sample_02_0784 Blood OSU-CLL 496 11 893 73 2 0 1291 ACP5,ELOF1,ECSIT,ZNF653,ZNF627,CNN1
SE_02_146600414 chr19:11555364-11588189 Sample_02_1466 Blood HUDEP-2_BCL11AKO 414 5 877 75 2 0 1198 ACP5,ELOF1,ECSIT,ZNF653,ZNF627,CNN1
SE_02_146700174 chr19:11555552-11588464 Sample_02_1467 Blood HUDEP-2_LRFKO 174 6 882 76 2 0 1167 ACP5,ELOF1,ECSIT,ZNF653,ZNF627,CNN1
SE_04_000200367 chr19:11556858-11588575 Sample_04_0002 Blood cold shocked K562 367 4 858 73 2 0 1151 ACP5,ELOF1,ECSIT,ZNF627,CNN1,ZNF653
SE_04_000100225 chr19:11557193-11588648 Sample_04_0001 Blood heat shocked K562 225 3 855 73 2 0 1151 ACP5,ELOF1,ECSIT,ZNF627,CNN1,ZNF653
SE_02_146800916 chr19:11557927-11588227 Sample_02_1468 Blood HUDEP-2_WT 916 3 828 71 2 0 1151 ACP5,ELOF1,ECSIT,ZNF627,CNN1
SE_02_012300225 chr19:11559128-11587889 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 225 5 795 69 2 0 1113 ACP5,ELOF1,ECSIT,ZNF627,CNN1
SE_02_138801042 chr19:11559357-11582693 Sample_02_1388 Peripheral blood JB6_ALK+ 1042 5 657 59 1 0 1063 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_136300268 chr19:11560667-11588487 Sample_02_1363 Blood Hudep2 268 8 769 64 2 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_075000276 chr19:11560838-11588287 Sample_02_0750 Lymphoma Rec-1_GSI 276 15 762 63 2 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_109900621 chr19:11560840-11588102 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 621 11 755 63 2 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1,ZNF653
SE_02_098700606 chr19:11560866-11588295 Sample_02_0987 Blood K562_Control_1 606 6 762 63 2 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1,ZNF653
SE_02_093001014 chr19:11561558-11584800 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1014 18 651 53 1 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131500385 chr19:11561595-11587264 Sample_02_1315 Brain hMGLs_INPP5D SNP 385 15 724 57 1 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_098800433 chr19:11561691-11588269 Sample_02_0988 Blood K562_EPZ 433 11 749 62 2 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1,ZNF653
SE_02_134500768 chr19:11561825-11587463 Sample_02_1345 Leukophereses leukophereses_p358 768 15 730 59 2 0 1011 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131800296 chr19:11562250-11586692 Sample_02_1318 Brain hMGLs_SORL1-A528T 296 10 692 54 1 0 969 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131600295 chr19:11562424-11587455 Sample_02_1316 Brain hMGLs_TREM2-R47H 295 14 714 58 2 0 948 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131700268 chr19:11562505-11587294 Sample_02_1317 Brain hMGLs_SORL1-KO 268 13 705 55 1 0 948 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131200431 chr19:11562553-11584617 Sample_02_1312 Brain hMGLs_WT 431 9 626 51 1 0 948 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131300545 chr19:11562714-11585218 Sample_02_1313 Brain hMGLs_CD33_SNP 545 10 641 52 1 0 948 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_075100317 chr19:11563617-11588313 Sample_02_0751 Lymphoma Rec-1_WO 317 14 701 58 2 0 948 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_073600193 chr19:11564417-11584688 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 193 10 574 48 1 0 881 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_149400327 chr19:11564582-11584031 Sample_02_1494 Other monocyte-derived dendritic cells_0h 327 10 558 48 1 0 855 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_131400481 chr19:11564629-11586712 Sample_02_1314 Brain hMGLs_TREM2-KO 481 10 629 51 1 0 845 ACP5,ECSIT,ELOF1,ZNF627,CNN1
SE_02_109800873 chr19:11567934-11600018 Sample_02_1098 Blood THP1_DMSO_noPMA 873 6 932 87 2 0 999 ZNF627,ACP5,ECSIT,ELOF1,CNN1
Genomic distribution of SEs associated with ECSIT
Genome Browser

The strength of the tissue affected by the gene

Expression of ECSIT

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)