SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000168329
Gene: CX3CR1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:39263495-39281735 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_074500376 chr3:39174970-39233360 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 376 12 1664 123 14 166 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_074600196 chr3:39174998-39233766 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 196 15 1666 124 14 166 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_038200430 chr3:39175527-39234298 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 430 6 1660 123 14 166 1500 XIRP1,CX3CR1,CSRNP1
SE_02_090400664 chr3:39175775-39234018 Sample_02_0904 Heart left ventricle_DCM_LV1028 664 12 1646 122 14 166 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_074700313 chr3:39175848-39233167 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 313 16 1632 120 14 166 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_092400561 chr3:39176371-39233614 Sample_02_0924 Heart fetal heart_PCW10_12569 561 16 1624 120 14 163 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_091301074 chr3:39176825-39233846 Sample_02_0913 Heart left ventricle_DCM_LV1304 1074 13 1619 121 14 163 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_122100342 chr3:39178111-39234824 Sample_02_1221 Bone marrow KMS11 342 11 1625 119 14 151 1500 XIRP1,CX3CR1,CSRNP1,MIR6822
SE_02_131600634 chr3:39208688-39233808 Sample_02_1316 Brain hMGLs_TREM2-R47H 634 9 659 65 8 2 0 XIRP1,CX3CR1
SE_02_012400894 chr3:39320279-39332277 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 894 2 300 28 1 2 86 CCR8,CX3CR1
SE_01_002500217 chr3:39320816-39363353 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 217 11 1078 99 2 24 240 CCR8,SNORA62,RPSA,CX3CR1,SNORA6,SLC25A38
SE_02_149201423 chr3:39320985-39363045 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1423 11 1068 98 2 24 240 CCR8,RPSA,CX3CR1,SNORA6,SLC25A38,SNORA62
SE_02_034900190 chr3:39321401-39384596 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 190 13 1674 158 2 39 409 SLC25A38,CCR8,SNORA62,RPSA,CX3CR1,SNORA6
SE_02_034800184 chr3:39321410-39384601 Sample_02_0348 Peripheral blood CUTLL1_wild-type 184 11 1674 158 2 39 409 SLC25A38,CCR8,SNORA62,RPSA,CX3CR1,SNORA6
SE_02_017600330 chr3:39321414-39390327 Sample_02_0176 Peripheral blood LOUCY 330 6 1820 176 2 44 475 SLC25A38,CCR8,SNORA62,RPSA,CX3CR1,SNORA6
SE_02_003100084 chr3:39321520-39389406 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 84 10 1804 175 2 42 418 SLC25A38,CCR8,SNORA62,RPSA,CX3CR1,SNORA6
SE_02_130000239 chr3:39321914-39375786 Sample_02_1300 Blood KARPAS-45 239 7 1408 136 2 25 240 CCR8,RPSA,CX3CR1,SNORA6,SLC25A38,SNORA62
SE_02_022400230 chr3:39328703-39363347 Sample_02_0224 Haematopoietic and lymphoid tissue P12-ICHIKAWA 230 6 887 77 1 23 240 CCR8,SNORA62,RPSA,CX3CR1,SNORA6,SLC25A38
Genomic distribution of SEs associated with CX3CR1
Genome Browser

The strength of the tissue affected by the gene

Expression of CX3CR1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)