SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000168090
Gene: COPS6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100088969-100092187 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077800327 chr7:100021548-100042629 Sample_02_0778 Mammary gland MCF7_FASR 327 3 551 47 2 76 889 ZKSCAN1,AZGP1,ZSCAN21,ZNF3,AZGP1P1,COPS6
SE_00_001600329 chr7:100097985-100103110 Sample_00_0016 Foreskin iPS-DF-19.11 334 1 177 15 1 77 946 AP4M1,MCM7,CNPY4,C7ORF59,MIR25,TAF6,COPS6,MIR106B,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_101701432 chr7:100098052-100103574 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1432 1 188 17 1 77 1000 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_146900751 chr7:100098252-100103389 Sample_02_1469 Umbilical Vein HUVEC 751 1 178 16 0 70 935 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_058400578 chr7:100098533-100103067 Sample_02_0584 Lung H1299 WT 578 1 156 15 0 70 842 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_097200740 chr7:100098916-100103471 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 740 1 158 14 0 59 833 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_115900481 chr7:100098970-100103969 Sample_02_1159 Mammary gland MCF7 481 1 179 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_085200479 chr7:100098970-100103985 Sample_02_0852 Mammary gland MCF7L-P 479 1 180 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_068500232 chr7:100099223-100102912 Sample_02_0685 Lung NCI-H1048_no infection 232 1 130 12 0 51 718 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_096800486 chr7:100099326-100103103 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 486 1 129 12 0 51 732 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_00_001001231 chr7:100099338-100102963 Sample_00_0010 Embryo endodermal-cell 1231 1 126 12 0 50 705 AP4M1,MCM7,CNPY4,C7ORF59,MIR25,TAF6,COPS6,MIR106B,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_085400627 chr7:100099443-100102847 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 627 1 111 12 0 44 668 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143300226 chr7:100099454-100103632 Sample_02_1433 Bone A673 STAG2 null 226 1 132 14 0 46 785 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143200448 chr7:100099468-100103022 Sample_02_1432 Bone A673 STAG2 WT 448 1 114 12 0 45 701 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126301470 chr7:100099469-100103470 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1470 1 129 13 0 46 758 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126800509 chr7:100099958-100104201 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 509 1 139 16 0 50 821 MCM7,AP4M1,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_04_000200715 chr7:100118281-100128369 Sample_04_0002 Blood cold shocked K562 715 1 266 21 1 64 1085 TAF6,CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35
SE_02_001600616 chr7:100118425-100128969 Sample_02_0016 Blood erythroblasts 616 2 270 23 1 64 1130 CNPY4,MBLAC1,TAF6,C7ORF59,MIR25,MCM7,MIR93,GPC2,GAL3ST4,COPS6,STAG3,MIR106B,ZNF3,C7ORF43,AP4M1
SE_02_066300613 chr7:100121164-100138688 Sample_02_0663 Thyroid TT 613 2 419 51 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_115900219 chr7:100121196-100130282 Sample_02_1159 Mammary gland MCF7 219 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_085200218 chr7:100121198-100130279 Sample_02_0852 Mammary gland MCF7L-P 218 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_077500910 chr7:100121209-100141289 Sample_02_0775 Pancreas EndoC-BH1_SE 910 8 484 57 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,AZGP1
SE_02_123900308 chr7:100121229-100131083 Sample_02_1239 Skin Waga_virus_positive 308 2 244 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_107700261 chr7:100121509-100131164 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 261 3 240 20 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_109900847 chr7:100122193-100131089 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 847 3 202 15 1 43 854 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35,ZKSCAN5
SE_02_020500047 chr7:100123968-100158310 Sample_02_0205 Stomach Gastric_Primary_Sample_T 47 5 864 84 1 142 1947 CNPY4,MBLAC1,C7ORF59,C7ORF43,MIR25,TAF6,MCM7,MIR93,GPC2,GAL3ST4,COPS6,STAG3,MIR106B,ZNF3,AP4M1
SE_00_004900605 chr7:100124549-100154157 Sample_00_0049 Small intestine small intestine 30y 605 5 745 78 1 48 1042 CNPY4,LAMTOR4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_077500011 chr7:99990663-100056175 Sample_02_0775 Pancreas EndoC-BH1_SE 11 30 1659 148 9 105 1616 ZSCAN21,ZKSCAN1,AZGP1,AP4M1,ZNF3,MIR93,MCM7,AZGP1P1,MIR106B,MIR25,COPS6
SE_02_104700651 chr7:99991228-100066952 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 651 21 1937 168 9 140 2018 ZSCAN21,ZKSCAN1,ZNF3,AZGP1,AP4M1,MIR93,MCM7,AZGP1P1,MIR106B,MIR25,COPS6
SE_02_032600159 chr7:99996339-100066834 Sample_02_0326 Liver hepatocytes_d3 159 14 1779 153 6 140 1680 ZSCAN21,ZKSCAN1,ZNF3,AZGP1P1,MIR106B,MCM7,COPS6,AZGP1,AP4M1,MIR25,MIR93
Genomic distribution of SEs associated with COPS6
Genome Browser

The strength of the tissue affected by the gene

Expression of COPS6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)