SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000165644
Gene: COMTD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:75233641-75236030 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104700635 chr10:75089995-75189762 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 635 29 2599 228 0 218 1993 DUSP13,SAMD8,VDAC2,COMTD1,DUPD1
SE_02_104900792 chr10:75103251-75189487 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 792 35 2173 185 0 175 1407 DUSP13,SAMD8,VDAC2,COMTD1,DUPD1
SE_02_017200833 chr10:75114452-75232819 Sample_02_0172 Lung IMR-90_quiescent 833 19 3103 261 1 163 1465 SAMD8,VDAC2,DUSP13,COMTD1
SE_02_143601069 chr10:75179808-75233628 Sample_02_1436 Liver LSEC-Ctrl 1069 16 1502 115 1 86 963 VDAC2,SAMD8,COMTD1
SE_02_143801179 chr10:75180060-75230514 Sample_02_1438 Liver LSEC 1179 16 1400 104 1 80 848 VDAC2,SAMD8,COMTD1
SE_02_063800674 chr10:75180222-75230537 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 674 15 1395 104 1 80 832 VDAC2,SAMD8,COMTD1
SE_02_046600500 chr10:75180303-75233948 Sample_02_0466 Adipose visceral adipocytes 500 36 1502 115 1 86 948 VDAC2,SAMD8,COMTD1
SE_02_047400955 chr10:75180329-75230560 Sample_02_0474 Fibroblast umbilical cord Fibroblast 955 16 1395 104 1 80 820 VDAC2,SAMD8,COMTD1
SE_02_113300716 chr10:75180361-75227309 Sample_02_1133 Liver Hepatic stellate cells 716 8 1304 96 1 74 792 VDAC2,SAMD8,COMTD1
SE_02_026100613 chr10:75180402-75233159 Sample_02_0261 Osteoblastic hFOB_differentiated 613 6 1470 112 1 86 900 SAMD8,VDAC2,COMTD1
SE_02_127900962 chr10:75180811-75231126 Sample_02_1279 Bone Mesenchymal stem cells 962 13 1391 106 1 82 821 VDAC2,SAMD8,COMTD1
SE_02_132800522 chr10:75181004-75227103 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 522 9 1278 95 1 73 738 VDAC2,SAMD8,COMTD1
SE_02_049900468 chr10:75181024-75230597 Sample_02_0499 Fetal lung IMR90 IR Senescence 468 27 1372 103 1 79 762 VDAC2,SAMD8,COMTD1
SE_02_024000261 chr10:75186003-75217391 Sample_02_0240 Colon V429_2 261 11 904 69 1 33 463 VDAC2,COMTD1
SE_02_047701170 chr10:75186005-75212582 Sample_02_0477 Colon intestinal epithelial organoids_139a 1170 13 750 61 1 32 441 VDAC2,COMTD1
SE_02_103200735 chr10:75186112-75207019 Sample_02_1032 Head and neck SCC1 JQ1 735 11 564 44 0 8 0 COMTD1,VDAC2
SE_02_102600236 chr10:75186747-75217400 Sample_02_1026 Esophagus KYSE200 236 15 884 68 1 33 463 VDAC2,COMTD1
SE_02_147200282 chr10:75187032-75228644 Sample_02_1472 Fetal lung IMR-90 282 11 1174 90 1 60 648 VDAC2,COMTD1
SE_02_154900732 chr10:75187047-75208324 Sample_02_1549 Gastrointestinal Stromal GIST-430B 732 8 579 50 0 8 0 COMTD1,VDAC2
SE_02_003801582 chr10:75187126-75209041 Sample_02_0038 Embryo DE 1582 6 592 50 0 9 0 COMTD1,VDAC2
SE_02_127700232 chr10:75187427-75203580 Sample_02_1277 Prostate PC3_COMBO 232 14 450 37 0 8 0 COMTD1,VDAC2
SE_02_024200319 chr10:75187792-75212703 Sample_02_0242 Colon V481 319 4 712 58 1 32 441 VDAC2,COMTD1
SE_02_072100743 chr10:75188175-75216811 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 743 10 832 61 1 33 463 VDAC2,COMTD1
SE_01_010900802 chr10:75188183-75212219 Sample_01_0109 Colon transverse colon_54y 802 10 686 54 1 30 420 VDAC2,COMTD1
SE_02_050001038 chr10:75188212-75227317 Sample_02_0500 Fetal lung IMR90_#2 1038 13 1104 80 1 60 648 VDAC2,COMTD1
SE_02_070700897 chr10:75188216-75226445 Sample_02_0707 Pancreas BxPC3 WT 897 9 1074 77 1 60 648 VDAC2,COMTD1
SE_02_071201279 chr10:75188272-75226240 Sample_02_0712 Pancreas BxPC3_sgNEG 1279 9 1065 77 1 60 648 VDAC2,COMTD1
SE_02_082600825 chr10:75188650-75233462 Sample_02_0826 Stomach gastric tumor 825 19 1270 97 1 72 762 VDAC2,COMTD1
SE_02_082700943 chr10:75189527-75203708 Sample_02_0827 Stomach normal gastric 943 4 397 29 0 7 0 COMTD1,VDAC2
SE_02_026200609 chr10:75191047-75229654 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 609 5 1086 81 1 59 660 VDAC2,COMTD1
SE_02_047500862 chr10:75191348-75210901 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 862 9 533 43 0 23 222 VDAC2,COMTD1
SE_02_088100692 chr10:75191428-75230700 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 692 5 1107 83 1 65 672 VDAC2,COMTD1
SE_02_026300932 chr10:75191484-75227647 Sample_02_0263 Osteoblastic hFOB_undifferentiated 932 5 1019 74 1 59 648 VDAC2,COMTD1
SE_02_087800950 chr10:75191573-75231036 Sample_02_0878 Ovary SVOG3e cells_noDox_control 950 5 1109 83 1 67 717 VDAC2,COMTD1
SE_02_117700660 chr10:75191617-75229111 Sample_02_1177 Brain GBM05 660 8 1052 77 1 59 648 VDAC2,COMTD1
SE_02_113000726 chr10:75191640-75212729 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 726 5 596 47 1 31 441 VDAC2,COMTD1
SE_02_088300797 chr10:75191649-75230637 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 797 7 1091 81 1 65 672 VDAC2,COMTD1
SE_02_158401086 chr10:75191652-75226301 Sample_02_1584 Brain U87 GBM_Mock 1086 8 964 70 1 59 648 VDAC2,COMTD1
SE_02_126500941 chr10:75191702-75231133 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 941 9 1099 84 1 69 726 VDAC2,COMTD1
SE_02_017500524 chr10:75191789-75231305 Sample_02_0175 Lung IMR-90_Etoposide 524 14 1101 85 1 70 735 VDAC2,COMTD1
SE_02_126601119 chr10:75191808-75228550 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 1119 7 1036 77 1 59 648 VDAC2,COMTD1
SE_02_093600578 chr10:75191905-75231144 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 578 13 1094 84 1 69 726 VDAC2,COMTD1
SE_02_113701025 chr10:75191913-75227938 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1025 8 1012 74 1 59 648 VDAC2,COMTD1
SE_02_086701487 chr10:75191934-75216029 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1487 8 697 54 1 32 463 VDAC2,COMTD1
SE_02_126900379 chr10:75191953-75228378 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 379 5 1026 76 1 59 648 VDAC2,COMTD1
SE_02_066100542 chr10:75191975-75212615 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 542 6 583 47 1 31 441 VDAC2,COMTD1
SE_01_010700179 chr10:75200910-75218776 Sample_01_0107 Esophagus esophagus squamous epithelium 179 1 524 40 1 29 503 VDAC2,COMTD1
SE_00_001100268 chr10:75201063-75213046 Sample_00_0011 Esophagus esophagus 268 1 349 32 1 28 441 VDAC2,COMTD1
SE_03_000300277 chr10:75201852-75217089 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 277 4 452 35 1 29 463 VDAC2,COMTD1
SE_02_125400782 chr10:75202120-75216121 Sample_02_1254 Bladder Bladder tumor Basal1 782 6 422 34 1 25 463 VDAC2,COMTD1
SE_02_136400275 chr10:75202978-75226749 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 275 5 677 49 1 52 648 VDAC2,COMTD1
SE_02_131900366 chr10:75203190-75228639 Sample_02_1319 Connective Tissue HT1080_DDIT3 366 5 726 53 1 52 648 VDAC2,COMTD1
SE_02_064801294 chr10:75207045-75212616 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1294 2 186 16 1 24 441 VDAC2,COMTD1
SE_02_002100750 chr10:75207225-75213060 Sample_02_0021 Colon V429 750 1 191 17 1 24 441 VDAC2,COMTD1
SE_02_064900757 chr10:75207984-75233955 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 757 6 759 58 1 64 797 VDAC2,COMTD1
SE_02_061900641 chr10:75209305-75230251 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 641 7 608 40 1 57 672 VDAC2,COMTD1
SE_02_065000373 chr10:75209753-75230770 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 373 5 620 43 1 57 679 VDAC2,COMTD1
SE_02_064400685 chr10:75210096-75212645 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 685 1 105 9 1 23 407 VDAC2,COMTD1
SE_02_003601671 chr10:75221901-75229388 Sample_02_0036 Embryo H7 1671 3 197 18 0 7 49 VDAC2,COMTD1
SE_00_002401049 chr10:75222234-75229350 Sample_00_0024 Embryo mesendoderm 1049 2 192 18 0 7 32 VDAC2,COMTD1
SE_02_056000846 chr10:75223004-75227437 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 846 2 120 12 0 0 0 VDAC2,COMTD1
SE_00_003101018 chr10:75243115-75255178 Sample_00_0031 Placenta placenta 1018 1 310 30 2 12 0 COMTD1,VDAC2,COTD1
SE_02_123200305 chr10:75244059-75273004 Sample_02_1232 Lung PC9_siMED13L-2 305 7 728 81 3 51 0 COMTD1,VDAC2,ZNF503-AS1
SE_01_010100230 chr10:75260254-75305947 Sample_01_0101 Pancreas pancreas_54y 230 7 1162 100 1 169 175 ZNF503,ZNF503-AS1,COMTD1,VDAC2
SE_02_003301079 chr10:75261104-75306158 Sample_02_0033 Pancreas pancreatic-islets-F 1079 5 1139 96 1 168 175 COMTD1
SE_02_024100385 chr10:75261229-75295922 Sample_02_0241 Colon V456 385 6 890 79 1 140 0 COMTD1
SE_02_003201074 chr10:75261315-75297087 Sample_02_0032 Pancreas pancreatic-islets-M 1074 4 920 81 1 155 108 COMTD1
SE_00_001000762 chr10:75271595-75296953 Sample_00_0010 Embryo endodermal-cell 762 3 671 56 0 117 108 COMTD1,VDAC2
SE_02_043600419 chr10:75275668-75297840 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 419 4 593 41 0 117 108 COMTD1
SE_00_003000425 chr10:75284202-75296501 Sample_00_0030 Pancreas pancreas 425 5 326 19 0 85 60 COMTD1
Genomic distribution of SEs associated with COMTD1
Genome Browser

The strength of the tissue affected by the gene

Expression of COMTD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)