SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000169019
Gene: COMMD8 Gene type: protein_coding
Strand: - External links:
Genomic region: chr4:47450787-47463702 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_134000285 chr4:47430361-47445693 Sample_02_1340 Blood acute myeloid leukemia 285 8 349 54 0 59 0 ATP10D,COMMD8
SE_02_093000871 chr4:47466604-47491134 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 871 16 649 52 0 31 74 ATP10D,COMMD8
SE_02_010500601 chr4:47469486-47487087 Sample_02_0105 Skin neonatal_keratinocytes 601 2 455 39 0 29 74 ATP10D,COMMD8
SE_02_142900333 chr4:47482212-47537363 Sample_02_1429 Blood GM12878_WT 333 13 1474 133 0 85 392 ATP10D,COMMD8
SE_02_023200583 chr4:47489548-47539320 Sample_02_0232 Tonsil ILC3 583 10 1333 128 0 72 318 ATP10D,COMMD8
SE_02_127900283 chr4:47498939-47567598 Sample_02_1279 Bone Mesenchymal stem cells 283 19 1894 236 6 122 762 ATP10D,COMMD8
SE_02_126700712 chr4:47499025-47532834 Sample_02_1267 Bone Im-GCT-4072_G34W 712 11 920 104 0 53 200 ATP10D,COMMD8
SE_02_060501078 chr4:47499090-47533002 Sample_02_0605 Skin Skin Fibroblast_DMSO 1078 5 923 103 0 53 200 ATP10D,COMMD8
SE_02_026300612 chr4:47499123-47533778 Sample_02_0263 Osteoblastic hFOB_undifferentiated 612 3 938 105 0 53 200 ATP10D,COMMD8
SE_02_157100459 chr4:47499143-47537689 Sample_02_1571 Fibroblast Fibroblast cells 459 9 1053 110 0 68 318 ATP10D,COMMD8
SE_02_142800943 chr4:47499261-47565513 Sample_02_1428 Shoulder fibroblast_316 943 12 1841 227 6 119 762 ATP10D,COMMD8
SE_02_126300472 chr4:47499354-47534081 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 472 4 941 104 0 53 200 ATP10D,COMMD8
SE_02_137800225 chr4:47499702-47579402 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 225 21 2161 265 6 155 1001 ATP10D,COMMD8
SE_02_005700095 chr4:47509332-47568818 Sample_02_0057 Mammary gland vHMEC 95 11 1641 203 6 118 780 ATP10D,COMMD8
SE_02_015100229 chr4:47509372-47566578 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 229 5 1582 195 6 114 762 ATP10D,COMMD8
SE_02_017200806 chr4:47509524-47578834 Sample_02_0172 Lung IMR-90_quiescent 806 8 1871 229 6 149 1001 ATP10D,COMMD8
SE_02_099200225 chr4:47509541-47534696 Sample_02_0992 Mammary gland MDA-MB-231_Par 225 4 681 68 0 50 200 ATP10D,COMMD8
SE_02_020900563 chr4:47509613-47566431 Sample_02_0209 Lung MRC-5_MRC5_1DPT 563 12 1571 193 6 114 762 ATP10D,COMMD8
SE_02_048100230 chr4:47509622-47566866 Sample_02_0481 Mammary gland MDA-MB231 230 20 1585 195 6 115 762 ATP10D,COMMD8
SE_02_099100800 chr4:47509675-47542932 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 800 7 907 83 1 70 318 ATP10D,COMMD8
SE_02_047400808 chr4:47509772-47565661 Sample_02_0474 Fibroblast umbilical cord Fibroblast 808 9 1555 190 6 113 762 ATP10D,COMMD8
SE_02_015000419 chr4:47509951-47566082 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 419 5 1562 192 6 114 762 ATP10D,COMMD8
SE_02_064700459 chr4:47509989-47554265 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 459 17 1223 151 3 80 444 ATP10D,COMMD8
SE_02_065200434 chr4:47510051-47554485 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 434 18 1229 152 3 81 444 ATP10D,COMMD8
SE_02_156600959 chr4:47510089-47565670 Sample_02_1566 Dermal Dermal fibroblast 959 13 1551 190 6 113 762 ATP10D,COMMD8
SE_02_071201166 chr4:47510094-47543370 Sample_02_0712 Pancreas BxPC3_sgNEG 1166 8 921 86 1 71 318 ATP10D,COMMD8
SE_02_064800653 chr4:47510117-47553980 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 653 16 1215 151 3 79 444 ATP10D,COMMD8
SE_01_011500420 chr4:47510133-47537688 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 420 5 753 71 0 62 318 ATP10D,COMMD8
SE_02_156900397 chr4:47510151-47534689 Sample_02_1569 Endothelial Endothelial cells 397 5 666 67 0 49 200 ATP10D,COMMD8
SE_02_048000480 chr4:47510152-47545377 Sample_02_0480 Gingival epithelial HGEP 480 10 970 97 1 71 318 ATP10D,COMMD8
SE_02_086700990 chr4:47510184-47539021 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 990 19 785 73 0 61 318 ATP10D,COMMD8
SE_02_143700782 chr4:47510277-47578751 Sample_02_1437 Liver LSEC-TNF 782 11 1854 228 6 148 1001 ATP10D,COMMD8
SE_02_132800196 chr4:47510330-47552649 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 196 12 1174 146 3 78 444 ATP10D,COMMD8
SE_02_050001184 chr4:47510344-47533759 Sample_02_0500 Fetal lung IMR90_#2 1184 9 628 66 0 46 200 ATP10D,COMMD8
SE_02_087801089 chr4:47510466-47533988 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1089 4 638 65 0 46 200 ATP10D,COMMD8
SE_02_132001306 chr4:47510537-47565407 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1306 17 1530 188 6 112 762 ATP10D,COMMD8
SE_02_049800245 chr4:47511062-47534246 Sample_02_0498 Fetal lung IMR90 Senescent_1 245 10 627 62 0 44 200 ATP10D,COMMD8
SE_02_049900534 chr4:47511409-47566205 Sample_02_0499 Fetal lung IMR90 IR Senescence 534 15 1529 185 6 110 762 ATP10D,COMMD8
SE_02_143800657 chr4:47513114-47578804 Sample_02_1438 Liver LSEC 657 11 1773 215 6 139 932 ATP10D,COMMD8
Genomic distribution of SEs associated with COMMD8
Genome Browser

The strength of the tissue affected by the gene

Expression of COMMD8

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)