SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000166091
Gene: CMTM5 Gene type: protein_coding
Strand: + External links:
Genomic region: chr14:23376773-23379772 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077501455 chr14:23316567-23335617 Sample_02_0775 Pancreas EndoC-BH1_SE 1455 5 506 33 0 140 1069 BCL2L2-PABPN1,PABPN1,PPP1R3E,SLC22A17,EFS,HOMEZ,CMTM5,IL25,BCL2L2,MYH6
SE_02_074600895 chr14:23321374-23327366 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 895 7 177 6 0 124 823 BCL2L2-PABPN1,PABPN1,PPP1R3E,SLC22A17,EFS,HOMEZ,CMTM5,IL25,BCL2L2
SE_02_074400966 chr14:23345063-23359224 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 966 5 392 24 1 177 1574 EFS,SLC22A17,PPP1R3E,PABPN1,MYH6,CMTM5,IL25,BCL2L2,MIR208A
SE_02_143300984 chr14:23346524-23367903 Sample_02_1433 Bone A673 STAG2 null 984 10 562 41 1 250 2237 EFS,SLC22A17,PPP1R3E,PABPN1,MYH6,BCL2L2,CMTM5,IL25,MHRT,MIR208A
SE_02_119200539 chr14:23357464-23367518 Sample_02_1192 Brain GBM26 539 6 264 21 0 86 935 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_01_008800817 chr14:23358073-23369344 Sample_01_0088 Tibial nerve tibial-nerve 817 1 297 25 0 83 869 EFS,CMTM5,SLC22A17,IL25,MIR208A,PABPN1,MIR208B,MYH6
SE_00_001000554 chr14:23358088-23367662 Sample_00_0010 Embryo endodermal-cell 554 2 248 21 0 82 869 EFS,CMTM5,SLC22A17,IL25,MIR208A,PABPN1,MYH6
SE_02_027500531 chr14:23358624-23367588 Sample_02_0275 Retina FW14 531 2 234 17 0 81 869 EFS,CMTM5,SLC22A17,IL25,MIR208A,PABPN1,MYH6
SE_02_117700346 chr14:23358949-23367718 Sample_02_1177 Brain GBM05 346 2 219 18 0 80 805 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_095600436 chr14:23359031-23367558 Sample_02_0956 Brain IDH1_2658 436 2 214 17 0 80 781 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_095500133 chr14:23359345-23367645 Sample_02_0955 Brain IDH1_2469 133 2 208 18 0 79 695 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_097800204 chr14:23359607-23367468 Sample_02_0978 Brain 2168_IDH1 204 3 198 17 0 70 600 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_121000201 chr14:23360103-23367207 Sample_02_1210 Brain GBM17 201 3 173 15 0 61 468 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_098200283 chr14:23360376-23367638 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 283 3 169 17 0 60 405 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_097300294 chr14:23360431-23367722 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 294 1 166 17 0 60 398 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_01_010701428 chr14:23360576-23368109 Sample_01_0107 Esophagus esophagus squamous epithelium 1428 4 171 18 0 60 357 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1,MIR208B
SE_02_123900362 chr14:23362153-23366395 Sample_02_1239 Skin Waga_virus_positive 362 2 91 4 0 44 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_01_002100904 chr14:23363074-23367324 Sample_01_0021 Skin bipolar-neuron 904 1 87 10 0 52 261 EFS,CMTM5,SLC22A17,IL25,MIR208A,PABPN1,MYH6
SE_02_118100618 chr14:23363075-23368375 Sample_02_1181 Brain GBM10 618 1 114 15 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1,MIR208B
SE_02_121300943 chr14:23363080-23368342 Sample_02_1213 Brain GBM31 943 1 113 15 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1,MIR208B
SE_02_117300774 chr14:23363104-23368160 Sample_02_1173 Brain GBM01 774 1 106 14 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1,MIR208B
SE_02_119600855 chr14:23363188-23367197 Sample_02_1196 Brain GBM32 855 1 82 10 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_121200734 chr14:23363194-23367582 Sample_02_1212 Brain GBM30 734 1 87 11 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_117600218 chr14:23363208-23367866 Sample_02_1176 Brain GBM04 218 1 94 12 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_118900181 chr14:23363221-23367633 Sample_02_1189 Brain GBM22 181 1 88 12 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_117900266 chr14:23363248-23368023 Sample_02_1179 Brain GBM08 266 1 96 13 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_096900694 chr14:23363381-23367591 Sample_02_0969 Brain H3.3K27M_PL637 694 1 84 11 0 52 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_093100227 chr14:23363477-23367312 Sample_02_0931 Embryo H9 UTXKO 227 1 75 10 0 50 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_120200447 chr14:23363503-23367336 Sample_02_1202 Brain GBM38 447 1 74 10 0 50 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_119000435 chr14:23363548-23367571 Sample_02_1190 Brain GBM24 435 1 78 11 0 50 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_107800421 chr14:23363551-23366384 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 421 1 57 3 0 42 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_02_119800810 chr14:23363631-23367184 Sample_02_1198 Brain GBM34 810 1 69 9 0 50 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1
SE_00_002900574 chr14:23363948-23367215 Sample_00_0029 Ovary ovary 574 1 60 9 0 50 261 EFS,CMTM5,SLC22A17,IL25,MIR208A,PABPN1,MYH6
SE_02_094500380 chr14:23364639-23370991 Sample_02_0945 Brain SF767 380 2 146 21 1 72 261 EFS,SLC22A17,MYH6,CMTM5,IL25,MHRT,MIR208A,PABPN1,MIR208B
SE_02_117300867 chr14:23374970-23381432 Sample_02_1173 Brain GBM01 867 1 211 17 1 43 837 IL25,CMTM5,SLC22A17,EFS,MYH6,MHRT,MIR208A,MIR208B
SE_00_002100011 chr14:23381699-23447231 Sample_00_0021 Lung lung_3y 11 11 2152 149 3 622 6465 MYH7,MIR208B,MYH6,MIR208A,CMTM5,SLC22A17,IL25,NGDN,EFS
SE_01_002300100 chr14:23384944-23412058 Sample_01_0023 Embryo cardiac-muscle-cell 100 1 949 61 3 284 2950 MYH6,MIR208A,CMTM5,SLC22A17,IL25,MYH7,MIR208B,EFS
SE_01_007600399 chr14:23396097-23448396 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 399 1 1692 114 1 492 4862 MYH7,MIR208B,MYH6,CMTM5,SLC22A17,IL25,MIR208A,NGDN,EFS
SE_02_074500192 chr14:23398004-23411287 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 192 1 484 29 0 130 1434 MYH6,SLC22A17,EFS,MYH7,CMTM5,IL25,MHRT,MIR208A,MIR208B
SE_02_074600165 chr14:23398019-23411127 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 165 1 482 29 0 130 1434 MYH6,SLC22A17,EFS,MYH7,CMTM5,IL25,MHRT,MIR208A,MIR208B
SE_00_005200484 chr14:23399601-23409652 Sample_00_0052 Heart left ventricle 3y 484 1 375 21 0 98 1310 MYH6,SLC22A17,EFS,MYH7,CMTM5,IL25,MHRT,MIR208A,MIR208B
SE_02_088901227 chr14:23401003-23416680 Sample_02_0889 Heart left ventricle_LV1183 1227 1 538 40 0 146 1607 MYH6,MHRT,MYH7,SLC22A17,EFS,CMTM5,IL25,MIR208A,MIR208B
SE_02_092100778 chr14:23401082-23413098 Sample_02_0921 Heart embryonic heart_CS22 778 1 430 28 0 102 1165 MYH6,MYH7,SLC22A17,EFS,CMTM5,IL25,MHRT,MIR208A,MIR208B,NGDN
SE_02_089800710 chr14:23401557-23423309 Sample_02_0898 Heart left ventricle_LV1356 710 1 726 49 0 215 2419 MIR208B,MYH6,MHRT,MYH7,SLC22A17,IL25,EFS,CMTM5,NGDN,MIR208A
SE_02_038100036 chr14:23402907-23450466 Sample_02_0381 Heart purified cardiomyocyte WT 36 1 1495 107 0 408 4017 MYH7,MIR208B,MYH6,CMTM5,IL25,MIR208A,NGDN,EFS
SE_02_088801263 chr14:23403695-23413325 Sample_02_0888 Heart left ventricle_LV1160 1263 1 322 25 0 90 872 MYH6,MYH7,EFS,CMTM5,IL25,MHRT,MIR208A,MIR208B
SE_00_005200685 chr14:23410239-23416415 Sample_00_0052 Heart left ventricle 3y 685 1 190 19 0 46 536 MHRT,MYH7,EFS,MYH6,CMTM5,IL25,MIR208A,MIR208B
SE_02_021500418 chr14:23410690-23420176 Sample_02_0215 Skin NHEK_siGRHL3 418 4 292 30 0 95 1148 MYH7,MIR208B,CMTM5,IL25,MIR208A,NGDN,EFS,MYH6
SE_02_021601504 chr14:23413220-23428903 Sample_02_0216 Skin NHEK_scramble 1504 5 463 36 0 196 2065 MYH7,MIR208B,CMTM5,IL25,MIR208A,NGDN,EFS,MYH6
SE_02_092400083 chr14:23415758-23438201 Sample_02_0924 Heart fetal heart_PCW10_12569 83 1 667 43 0 254 2719 MIR208B,MHRT,MYH7,IL25,MYH6,CMTM5,NGDN,MIR208A
SE_02_092300049 chr14:23416665-23447151 Sample_02_0923 Heart fetal heart_PCW10_12522 49 1 944 63 0 270 2583 MIR208B,MHRT,MYH7,IL25,MYH6,CMTM5,NGDN,MIR208A
SE_01_009800222 chr14:23418724-23447021 Sample_01_0098 Heart left ventricle_51y 222 1 870 55 0 254 2200 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_091400473 chr14:23420071-23446538 Sample_02_0914 Heart left ventricle_DCM_LV1342 473 18 815 51 0 228 1995 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_092500068 chr14:23420077-23447625 Sample_02_0925 Heart fetal heart_PCW17_12570 68 1 846 53 0 227 1994 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_092200097 chr14:23420086-23447104 Sample_02_0922 Heart fetal heart_PCW10_12434 97 1 828 53 0 226 1993 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_038200090 chr14:23420119-23450452 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 90 1 931 61 0 224 1987 MYH7,CMTM5,IL25,MIR208A,NGDN,MIR208B,MYH6
SE_02_090801029 chr14:23420305-23449584 Sample_02_0908 Heart left ventricle_DCM_LV1262 1029 12 907 56 0 214 1944 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_090900328 chr14:23420429-23446868 Sample_02_0909 Heart left ventricle_DCM_LV1264 328 11 815 53 0 214 1929 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_088701034 chr14:23422724-23435697 Sample_02_0887 Heart left ventricle_LV1121 1034 1 362 29 0 152 1706 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_089200349 chr14:23422745-23447102 Sample_02_0892 Heart left ventricle_LV1215 349 1 751 52 0 202 1750 MYH7,IL25,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
SE_02_090400251 chr14:23425945-23447081 Sample_02_0904 Heart left ventricle_DCM_LV1028 251 1 655 45 0 161 1360 MYH7,MYH6,CMTM5,NGDN,MHRT,MIR208A,MIR208B
Genomic distribution of SEs associated with CMTM5
Genome Browser

The strength of the tissue affected by the gene

Expression of CMTM5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)