Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000136108
Gene: CKAP2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr13:52455429-52476628 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_080800292 chr13:52343569-52414610 Sample_02_0808 Ovary RMG1_ARID1A KO 292 26 1913 191 1 128 930 VPS36,THSD1,CKAP2,LOC103191607
SE_02_076201478 chr13:52393417-52430674 Sample_02_0762 Podocyte podocyte_CTL 1478 7 981 78 0 109 921 VPS36,THSD1,CKAP2
SE_02_094900696 chr13:52393787-52448530 Sample_02_0949 Umbilical artery HUAEC_WT 696 20 1448 116 1 135 1104 VPS36,THSD1,TPTE2P3,CKAP2
SE_02_156900922 chr13:52403959-52439336 Sample_02_1569 Endothelial Endothelial cells 922 7 936 65 1 86 865 VPS36,THSD1,TPTE2P3,CKAP2
SE_02_005700766 chr13:52404001-52429295 Sample_02_0057 Mammary gland vHMEC 766 4 667 44 0 69 719 THSD1,VPS36,CKAP2
SE_02_076300799 chr13:52404015-52428977 Sample_02_0763 Podocyte podocyte_DEX 799 4 661 44 0 69 719 VPS36,THSD1,CKAP2
SE_02_060300080 chr13:52404223-52418061 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 80 3 385 24 0 44 589 VPS36,THSD1,CKAP2
SE_02_048000381 chr13:52404260-52453854 Sample_02_0480 Gingival epithelial HGEP 381 18 1291 93 1 103 1138 VPS36,THSD1,TPTE2P3,CKAP2
SE_02_059600166 chr13:52404265-52450713 Sample_02_0596 Mammary gland MCF10A_ DMSO 166 6 1220 89 1 103 1113 VPS36,THSD1,TPTE2P3,CKAP2
SE_02_064400760 chr13:52404407-52416045 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 760 5 325 22 0 35 500 VPS36,THSD1,CKAP2
SE_02_059700161 chr13:52410519-52417917 Sample_02_0597 Mammary gland MCF10A_Nutlin3A 161 2 192 10 0 32 381 VPS36,THSD1,CKAP2
SE_02_060100186 chr13:52410560-52417041 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 186 1 163 9 0 29 335 VPS36,THSD1,CKAP2
SE_02_060000248 chr13:52410563-52417004 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 248 1 162 9 0 29 331 VPS36,THSD1,CKAP2
SE_02_060200309 chr13:52410599-52434343 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 309 3 616 41 0 63 570 VPS36,THSD1,CKAP2
SE_02_060400145 chr13:52410670-52417198 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 145 2 163 9 0 32 354 VPS36,THSD1,CKAP2
SE_02_064800685 chr13:52410691-52429451 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 685 8 466 30 0 59 529 VPS36,THSD1,CKAP2
SE_02_059500066 chr13:52410770-52418071 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 66 2 183 10 0 34 401 VPS36,THSD1,CKAP2
SE_02_047401197 chr13:52410812-52431225 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1197 5 517 34 0 59 529 VPS36,THSD1,CKAP2
SE_02_064501480 chr13:52410914-52429217 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1480 6 456 30 0 59 529 VPS36,THSD1,CKAP2
SE_02_064900562 chr13:52410940-52429234 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 562 8 457 30 0 59 529 VPS36,THSD1,CKAP2
SE_02_065000809 chr13:52411313-52429077 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 809 5 440 30 0 59 529 VPS36,THSD1,CKAP2
SE_02_064601315 chr13:52411535-52428995 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1315 5 430 29 0 58 529 VPS36,THSD1,CKAP2
SE_02_068200495 chr13:52416584-52450678 Sample_02_0682 Blood Kasumi-1 495 9 877 66 1 64 583 VPS36,TPTE2P3,CKAP2,THSD1
SE_02_108301061 chr13:52426156-52451324 Sample_02_1083 Macula macula 1061 10 649 48 1 44 479 VPS36,TPTE2P3,CKAP2,THSD1
SE_02_109800877 chr13:52493362-52524760 Sample_02_1098 Blood THP1_DMSO_noPMA 877 11 647 33 0 0 355 TPTE2P3,VPS36,CKAP2
SE_02_099500914 chr13:52498337-52523977 Sample_02_0995 Blood MOLM-13_empty vector 914 6 537 29 0 0 315 TPTE2P3,VPS36,CKAP2

Genomic distribution of SEs associated with CKAP2

The strength of the tissue affected by the gene


Expression of CKAP2