SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000079385
Gene: CEACAM1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:42507304-42561234 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_000300123 chr19:42419784-42498450 Sample_00_0003 Adrenal gland adrenal-gland_97d 123 11 1904 137 1 99 1076 LIPE,CXCL17,CNFN,CEACAM1
SE_02_035900069 chr19:42420090-42499669 Sample_02_0359 Colon Colo741 69 9 1921 137 1 101 1076 LIPE,CXCL17,CNFN,CEACAM1
SE_02_018500058 chr19:42435203-42499461 Sample_02_0185 Skin UACC257 58 18 1509 119 1 65 109 CXCL17,CNFN,CEACAM1,LIPE
SE_01_008501087 chr19:42438473-42499269 Sample_01_0085 Stomach stomach 1087 7 1421 109 1 60 109 CXCL17,CNFN,CEACAM1,LIPE
SE_02_081900127 chr19:42438479-42499444 Sample_02_0819 Ovary Mucinous ovarian cancer 127 13 1423 109 1 60 109 LIPE-AS1,CXCL17,LIPE,CNFN,LOC101930071,CEACAM1
SE_02_129700289 chr19:42438589-42491043 Sample_02_1297 Lung lung 289 19 1240 98 1 48 109 LIPE-AS1,CXCL17,LIPE,CNFN,LOC101930071,CEACAM1
SE_02_045400351 chr19:42438692-42531615 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 351 21 2187 158 1 86 1444 LIPE-AS1,CXCL17,CEACAM1,LIPE,CNFN,LOC101930071
SE_02_009500246 chr19:42440275-42498568 Sample_02_0095 Mammary gland MDA-MB-468 246 7 1374 106 1 58 109 CXCL17,CNFN,CEACAM1,LIPE
SE_02_018300323 chr19:42440485-42488995 Sample_02_0183 Skin SKMEL2 323 9 1166 92 1 48 109 CXCL17,CEACAM1,LIPE
SE_02_047701126 chr19:42448950-42501019 Sample_02_0477 Colon intestinal epithelial organoids_139a 1126 18 1197 88 1 53 32 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_047801064 chr19:42449524-42500521 Sample_02_0478 Colon normal colon mucosa 1064 25 1176 86 1 53 32 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_149300215 chr19:42449994-42498590 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 215 15 1129 82 1 51 32 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_130400733 chr19:42450201-42513893 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 733 23 1483 105 1 64 500 LIPE-AS1,CEACAM1,CXCL17,LIPE
SE_02_012400200 chr19:42454843-42492753 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 200 6 849 66 1 34 32 CXCL17,CEACAM1,LIPE
SE_02_018400708 chr19:42460237-42481994 Sample_02_0184 Skin SKMEL30 708 5 507 40 1 20 0 CXCL17,CEACAM1,LIPE
SE_02_085800487 chr19:42460387-42481888 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 487 4 499 40 1 20 0 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_073000269 chr19:42461597-42515382 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 269 12 1228 80 0 41 554 LIPE-AS1,CEACAM1,CXCL17,LIPE
SE_02_073200306 chr19:42461847-42513834 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 306 13 1186 78 0 39 500 LIPE-AS1,CEACAM1,CXCL17,LIPE
SE_02_147500482 chr19:42464248-42495584 Sample_02_1475 Bone CHLA-25 482 5 704 45 0 9 32 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_075000930 chr19:42464638-42481083 Sample_02_0750 Lymphoma Rec-1_GSI 930 6 371 27 0 9 0 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_148100774 chr19:42464902-42498161 Sample_02_1481 Bone MIC 774 6 734 50 0 19 32 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_155500422 chr19:42465254-42497956 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 422 10 715 49 0 17 32 LIPE-AS1,CXCL17,CEACAM1,LIPE
SE_02_028500396 chr19:42478823-42499592 Sample_02_0285 Liver HuH7_untreat 396 3 457 26 0 12 32 CXCL17,CEACAM1
SE_02_049401290 chr19:42480569-42499613 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1290 4 421 25 0 12 32 LIPE-AS1,CXCL17,CEACAM1
SE_02_077501924 chr19:42482911-42541036 Sample_02_0775 Pancreas EndoC-BH1_SE 1924 17 1328 79 0 38 1367 LIPE-AS1,CEACAM1,CXCL17
SE_02_082601014 chr19:42483595-42526041 Sample_02_0826 Stomach gastric tumor 1014 15 964 54 0 34 1147 LIPE-AS1,CEACAM1,CXCL17
SE_02_155100438 chr19:42522867-42567475 Sample_02_1551 Gastrointestinal Stromal MaMel 438 13 1075 89 0 4 300 LIPE-AS1,CEACAM1,CEACAM8
SE_02_010400628 chr19:42553502-42595944 Sample_02_0104 Blood neutrophils 628 9 987 92 0 0 609 CEACAM8,CEACAM1
SE_02_024200825 chr19:42566179-42597271 Sample_02_0242 Colon V481 825 4 713 68 0 0 609 CEACAM8,CEACAM1
SE_02_024100595 chr19:42566312-42579925 Sample_02_0241 Colon V456 595 5 282 29 0 0 0 CEACAM1,CEACAM8
SE_02_023600137 chr19:42566738-42590397 Sample_02_0236 Colon V206 137 6 523 54 0 0 390 CEACAM8,CEACAM1
Genomic distribution of SEs associated with CEACAM1
Genome Browser

The strength of the tissue affected by the gene

Expression of CEACAM1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)