SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000213213
Gene: CCDC183 Gene type: protein_coding
Strand: + External links:
Genomic region: chr9:136796338-136807741 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045300665 chr9:136758611-136770948 Sample_02_0453 Neuroblastoma SJNB3 665 3 402 67 0 7 766 LCN15,LOC100128593,LCN6,CCDC183,RABL6,LCN8,SNHG7,MIR6722,SNORA17,FAM69B,TMEM141,SNORA43,LCN10,CCDC183-AS1
SE_02_074501451 chr9:136779679-136782767 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1451 1 126 28 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_082000692 chr9:136780876-136790764 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 692 3 352 72 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_04_000200768 chr9:136783710-136795535 Sample_04_0002 Blood cold shocked K562 768 1 398 62 0 19 558 TMEM141,LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,MIR6722,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_04_000101224 chr9:136783831-136792689 Sample_04_0001 Blood heat shocked K562 1224 1 297 58 0 17 387 TMEM141,LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_075300295 chr9:136784684-136790942 Sample_02_0753 Embryo ES-derived progenitors_FG type 295 1 208 46 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_046900403 chr9:136785368-136790693 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 403 4 170 37 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_075600446 chr9:136785500-136790869 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 446 1 172 34 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_075700527 chr9:136787753-136790886 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 527 1 91 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_075400670 chr9:136787840-136790852 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 670 1 85 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_074500218 chr9:136787861-136790873 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 218 1 86 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_074400197 chr9:136787975-136790809 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 197 1 77 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_107800429 chr9:136821317-136842875 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 429 7 881 27 1 103 3210 MIR4292,RABL6,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,C9ORF172,MIR4479,MAMDC4,PHPT1
SE_02_076500435 chr9:136831504-136844672 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 435 1 523 14 0 100 2227 RABL6,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,MIR4479,MIR4292,MAMDC4,PHPT1
SE_02_066300815 chr9:136837707-136844191 Sample_02_0663 Thyroid TT 815 1 256 7 0 63 793 RABL6,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,C9ORF172,MIR4479,MIR4292,MAMDC4,PHPT1
SE_02_085701245 chr9:136837923-136844371 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1245 1 245 6 0 66 791 RABL6,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,C9ORF172,MIR4479,MIR4292,MAMDC4,PHPT1
SE_02_085400409 chr9:136838062-136844414 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 409 1 241 5 0 59 757 RABL6,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,MIR4479,MIR4292,MAMDC4,PHPT1
SE_02_110400493 chr9:136838853-136850978 Sample_02_1104 Brain NB-69 493 4 409 14 0 164 2095 PHPT1,RABL6,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,MIR4479,MIR4292,MAMDC4
SE_02_081900878 chr9:136839703-136851590 Sample_02_0819 Ovary Mucinous ovarian cancer 878 1 385 14 0 156 1946 PHPT1,RABL6,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,MIR4479,MIR4292,MAMDC4
SE_02_077400170 chr9:136839984-136850285 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 170 2 313 13 0 147 1631 PHPT1,RABL6,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,MIR4479,MIR4292,MAMDC4
SE_02_102700101 chr9:136840997-136850365 Sample_02_1027 Esophagus KYSE180_1 101 4 272 13 0 127 1409 PHPT1,RABL6,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,MIR4479,MIR4292,MAMDC4
SE_02_055500677 chr9:136841255-136850858 Sample_02_0555 Other HAP1_WT 677 3 280 12 0 129 1469 PHPT1,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,TMEM141,EDF1,RABL6,MIR4479,MIR4292,MAMDC4
SE_02_103000259 chr9:136844950-136853683 Sample_02_1030 Colon DKO 259 1 310 11 1 103 1652 PHPT1,MAMDC4,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,EDF1,RABL6,MIR4292,MIR4479
SE_02_076500133 chr9:136845028-136853683 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 133 1 309 11 1 101 1630 PHPT1,MAMDC4,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,EDF1,RABL6,MIR4292,MIR4479
SE_02_081700577 chr9:136845576-136850400 Sample_02_0817 Ovary Epithelial ovarian cancer 577 1 147 8 0 78 956 PHPT1,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,EDF1,MAMDC4,RABL6,MIR4292,MIR4479
SE_02_103501893 chr9:136846036-136849217 Sample_02_1035 Mammary gland HCC70_Vehicle 1893 1 76 4 0 54 539 PHPT1,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,EDF1,MAMDC4,RABL6,MIR4292,MIR4479
SE_02_094600624 chr9:136846298-136850039 Sample_02_0946 Tongue HN12 624 1 111 6 0 58 675 PHPT1,C9ORF172,TRAF2,CCDC183-AS1,CCDC183,EDF1,MAMDC4,RABL6,MIR4292,MIR4479
Genomic distribution of SEs associated with CCDC183
Genome Browser

The strength of the tissue affected by the gene

Expression of CCDC183

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)