SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000143318
Gene: CASQ1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:160190575-160201886 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_007000569 chr1:160084474-160150610 Sample_01_0070 Ascending aorta ascending-aorta 569 9 1875 164 9 506 4002 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10,CASQ1
SE_01_007300542 chr1:160084524-160150711 Sample_01_0073 Coronary artery coronary-artery 542 7 1881 164 9 506 3999 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10,CASQ1
SE_01_009700065 chr1:160086191-160149133 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 65 8 1803 155 8 472 3884 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10,CASQ1
SE_01_007600125 chr1:160095199-160150552 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 125 2 1590 137 7 380 2598 IGSF8,ATP1A2,ATP1A4,KCNJ10,CASQ1,KCNJ9
SE_02_097700104 chr1:160095297-160145400 Sample_02_0977 Brain 2089_H3.3K27WT 104 26 1451 123 6 371 2574 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10,CASQ1
SE_02_001900539 chr1:160099021-160141448 Sample_02_0019 Embryo Neural crest cells 539 17 1259 102 6 308 1960 ATP1A2,ATP1A4,KCNJ10,IGSF8,CASQ1,KCNJ9
SE_02_036800072 chr1:160100518-160145683 Sample_02_0368 Skeletal muscle NS134 72 5 1336 117 6 321 2290 ATP1A2,ATP1A4,KCNJ10,IGSF8,CASQ1,KCNJ9
SE_02_091200614 chr1:160100580-160148330 Sample_02_0912 Heart left ventricle_DCM_LV1300 614 16 1389 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090801089 chr1:160100610-160143128 Sample_02_0908 Heart left ventricle_DCM_LV1262 1089 20 1273 109 6 306 2228 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_091300613 chr1:160100627-160169446 Sample_02_0913 Heart left ventricle_DCM_LV1304 613 29 2105 198 10 394 3096 ATP1A2,ATP1A4,KCNJ9,KCNJ10,PEA15,IGSF8,CASQ1,LOC729867
SE_02_090400798 chr1:160100653-160160136 Sample_02_0904 Heart left ventricle_DCM_LV1028 798 14 1798 172 9 348 2799 ATP1A2,ATP1A4,KCNJ9,KCNJ10,PEA15,IGSF8,CASQ1,LOC729867
SE_02_088900635 chr1:160100715-160160195 Sample_02_0889 Heart left ventricle_LV1183 635 15 1796 172 9 349 2799 ATP1A2,ATP1A4,KCNJ9,KCNJ10,PEA15,IGSF8,CASQ1,LOC729867
SE_00_004600316 chr1:160100751-160148030 Sample_00_0046 Heart right ventricle_34y 316 24 1376 120 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089200747 chr1:160100752-160148342 Sample_02_0892 Heart left ventricle_LV1215 747 12 1387 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089800650 chr1:160100880-160148480 Sample_02_0898 Heart left ventricle_LV1356 650 10 1391 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090700521 chr1:160100980-160148457 Sample_02_0907 Heart left ventricle_DCM_LV1223 521 19 1387 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090900659 chr1:160101039-160148474 Sample_02_0909 Heart left ventricle_DCM_LV1264 659 15 1385 120 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090500902 chr1:160101140-160148553 Sample_02_0905 Heart left ventricle_DCM_LV1033 902 12 1383 120 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089100451 chr1:160101200-160148667 Sample_02_0891 Heart left ventricle_LV1202 451 20 1383 119 7 320 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_118200140 chr1:160101243-160145423 Sample_02_1182 Brain GBM11 140 11 1312 115 6 314 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_00_005200856 chr1:160101290-160148275 Sample_00_0052 Heart left ventricle 3y 856 13 1369 119 7 314 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_046500157 chr1:160101304-160149892 Sample_02_0465 Adipose subcutaneous adipocytes 157 27 1429 126 7 319 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_01_009400146 chr1:160112619-160144131 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 146 1 957 77 5 266 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_01_011500453 chr1:160121249-160166815 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 453 15 1438 143 8 283 2698 ATP1A2,ATP1A4,KCNJ9,LOC729867,PEA15,IGSF8,CASQ1
SE_02_086100692 chr1:160168305-160171010 Sample_02_0861 iPSCs SAH_WT 692 2 81 5 0 0 222 ATP1A4,CASQ1,LOC729867,PEA15
SE_02_086000464 chr1:160168449-160171932 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 464 3 113 9 0 8 371 ATP1A4,CASQ1,LOC729867,PEA15
SE_00_001000812 chr1:160168556-160190146 Sample_00_0010 Embryo endodermal-cell 812 5 678 74 3 56 1142 ATP1A4,CASQ1,PEA15
SE_00_002401293 chr1:160168582-160178304 Sample_00_0024 Embryo mesendoderm 1293 2 318 38 1 30 847 ATP1A4,CASQ1,PEA15
SE_02_108300571 chr1:160203484-160214324 Sample_02_1083 Macula macula 571 1 235 13 1 140 1019 LOC729867,PEA15,DCAF8,ATP1A4,CASQ1
SE_02_026100864 chr1:160203708-160222142 Sample_02_0261 Osteoblastic hFOB_differentiated 864 2 390 19 2 213 1724 PEA15,DCAF8,ATP1A4,CASQ1
SE_02_097200834 chr1:160204333-160219798 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 834 6 328 17 2 206 1724 DCAF8,LOC729867,PEA15,ATP1A4,CASQ1
SE_02_072700981 chr1:160204824-160219957 Sample_02_0727 Fetal lung IMR90_Etoposide 981 3 326 17 2 198 1724 DCAF8,LOC729867,PEA15,ATP1A4,CASQ1
SE_02_136400246 chr1:160204874-160217817 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 246 2 276 15 1 176 1564 DCAF8,LOC729867,PEA15,ATP1A4,CASQ1
SE_02_141600802 chr1:160204875-160220757 Sample_02_1416 Brain SF9402 802 5 338 18 2 196 1723 DCAF8,LOC729867,PEA15,ATP1A4,CASQ1
SE_00_001001051 chr1:160205318-160212104 Sample_00_0010 Embryo endodermal-cell 1051 1 153 7 1 89 633 PEA15,ATP1A4,CASQ1
SE_02_023400693 chr1:160205392-160264852 Sample_02_0234 Tonsil Th17 693 13 1382 93 4 355 2427 DCAF8,PEA15,ATP1A4,CASQ1,PEX19
SE_02_118200480 chr1:160205394-160211898 Sample_02_1182 Brain GBM11 480 1 151 7 1 87 601 LOC729867,PEA15,ATP1A4,CASQ1
SE_02_084900432 chr1:160205395-160219717 Sample_02_0849 iPSCs iPSC_CBP-30 432 3 310 17 2 180 1579 DCAF8,LOC729867,PEA15,ATP1A4,CASQ1
SE_02_090700483 chr1:160207037-160263310 Sample_02_0907 Heart left ventricle_DCM_LV1223 483 20 1314 85 4 330 2155 DCAF8,PEA15,LOC729867,ATP1A4,CASQ1,PEX19
SE_02_104901333 chr1:160210608-160303002 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1333 32 2229 167 9 438 3741 DCAF8,PEA15,PEX19,COPA,SUMO1P3,ATP1A4,LOC729867,NCSTN,CASQ1
SE_02_007300482 chr1:160211297-160222863 Sample_02_0073 Other 90-8TL_DMSO 482 5 240 11 1 114 1126 PEA15,DCAF8,ATP1A4,CASQ1
SE_01_009400677 chr1:160217209-160263535 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 677 15 1108 74 3 203 1125 DCAF8,ATP1A4,LOC729867,PEA15,CASQ1,PEX19
SE_02_104701731 chr1:160224835-160270482 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1731 15 1115 90 3 153 709 DCAF8,SUMO1P3,ATP1A4,LOC729867,PEA15,CASQ1,PEX19
SE_01_007600858 chr1:160234074-160263846 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 858 3 739 56 1 115 554 DCAF8,PEA15,CASQ1,PEX19
SE_02_142901074 chr1:160234732-160264040 Sample_02_1429 Blood GM12878_WT 1074 12 731 57 1 115 554 DCAF8,LOC729867,PEA15,CASQ1,PEX19
SE_02_032501235 chr1:160236852-160266131 Sample_02_0325 Liver hepatocytes_d1 1235 6 712 57 2 115 554 DCAF8,PEA15,CASQ1,PEX19
SE_02_032600900 chr1:160237707-160266371 Sample_02_0326 Liver hepatocytes_d3 900 6 703 57 2 111 511 DCAF8,PEA15,CASQ1,PEX19
SE_02_092001066 chr1:160238068-160263152 Sample_02_0920 Heart left ventricle_DCM_LV1535 1066 6 624 45 1 111 511 DCAF8,LOC729867,PEA15,CASQ1,PEX19
SE_02_088901403 chr1:160238245-160263425 Sample_02_0889 Heart left ventricle_LV1183 1403 11 624 43 1 107 511 DCAF8,LOC729867,PEA15,CASQ1,PEX19
Genomic distribution of SEs associated with CASQ1
Genome Browser

The strength of the tissue affected by the gene

Expression of CASQ1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)