SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: BRE-AS1 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_099400022 chr2:27771081-27850104 Sample_02_0994 Blood MOLM13_SIK3TQ 22 29 1784 112 11 192 633 MRPL33,RBKS,BRE-AS1,BRE
SE_02_099500079 chr2:27792506-27841581 Sample_02_0995 Blood MOLM-13_empty vector 79 32 1142 76 7 114 224 RBKS,MRPL33,BRE-AS1,BRE
SE_02_150000273 chr2:27837617-27874013 Sample_02_1500 Brain KELLY_untreat 273 15 788 67 3 148 267 RBKS,BRE,BRE-AS1
SE_02_126300776 chr2:27853858-27861388 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 776 2 155 11 0 45 37 RBKS,BRE,BRE-AS1
SE_02_126701394 chr2:27854448-27861114 Sample_02_1267 Bone Im-GCT-4072_G34W 1394 3 136 9 0 45 37 RBKS,BRE,BRE-AS1
SE_01_010800103 chr2:27893102-27921440 Sample_01_0108 Adrenal gland adrenal gland_37y 103 14 659 34 1 54 55 BRE,RBKS,BRE-AS1
SE_04_000700049 chr2:27910925-28011609 Sample_04_0007 Lung A549 FOXA2 shRNA2 49 22 2201 122 3 257 197 BRE,MIR4263,RBKS,BRE-AS1
SE_02_045600391 chr2:27911743-27967660 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 391 12 1243 72 1 131 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_098900666 chr2:27911883-27967755 Sample_02_0989 Kidney kidney cortex_WT 666 27 1243 72 1 131 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_149200179 chr2:27913612-27936498 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 179 1 508 36 0 29 28 BRE,RBKS,BRE-AS1
SE_02_083300342 chr2:27913881-27994448 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 342 24 1792 99 2 194 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_058000301 chr2:27914009-27989721 Sample_02_0580 Blood HEL_sgSIK3e4 301 27 1706 95 2 185 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_046000423 chr2:27914112-27962366 Sample_02_0460 Blood ME-1_I-10-49_6h 423 18 1063 63 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_057900361 chr2:27914253-27971698 Sample_02_0579 Blood HEL_sgNeg2 361 21 1278 73 0 133 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_083500703 chr2:27914941-27994284 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 703 26 1763 96 2 194 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_158200075 chr2:27915533-28004851 Sample_02_1582 Renal OS-RC-2 75 23 1964 110 2 218 197 BRE,MIR4263,RBKS,BRE-AS1
SE_02_071000740 chr2:27916135-27933026 Sample_02_0710 Pancreas hN34_organoid 740 8 365 28 0 29 28 BRE,RBKS,BRE-AS1
SE_02_058900096 chr2:27916198-27980625 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 96 27 1443 82 1 155 28 BRE,RBKS,BRE-AS1,MIR4263
SE_04_000400032 chr2:27916403-27994204 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 32 18 1735 93 2 194 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_059000323 chr2:27916442-27933075 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 323 10 364 27 0 29 28 BRE,RBKS,BRE-AS1
SE_02_158100194 chr2:27916449-27962484 Sample_02_1581 Renal OS-LM1 194 11 1024 58 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_077000388 chr2:27916450-28004134 Sample_02_0770 Ovary OVCA429_shLuc 388 36 1939 108 2 210 197 BRE,MIR4263,RBKS,BRE-AS1
SE_04_000600372 chr2:27916568-27962526 Sample_04_0006 Lung A549 GFP control 372 14 1023 57 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_076200274 chr2:27916654-28005126 Sample_02_0762 Podocyte podocyte_CTL 274 20 1949 107 2 218 197 BRE,MIR4263,RBKS,BRE-AS1
SE_02_087500279 chr2:27917990-27939390 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 279 1 494 34 0 29 28 BRE,RBKS,BRE-AS1
SE_02_094900434 chr2:27918128-27960654 Sample_02_0949 Umbilical artery HUAEC_WT 434 23 941 54 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_082000285 chr2:27920178-27960917 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 285 7 907 50 0 121 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_082100195 chr2:27920215-27961581 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 195 8 920 51 0 121 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_130100208 chr2:27920239-27962854 Sample_02_1301 Blood PER-117 208 13 957 52 0 123 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_134100237 chr2:27921536-27967318 Sample_02_1341 Blood MV411 237 16 1029 58 0 116 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_099400409 chr2:27933683-27962099 Sample_02_0994 Blood MOLM13_SIK3TQ 409 12 623 31 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_139100343 chr2:27933965-27980974 Sample_02_1391 Peripheral blood FE-PD_ALK- 343 9 1055 53 1 126 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_057700738 chr2:27934343-27961467 Sample_02_0577 Blood MOLM13_empty 738 9 589 29 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_099500360 chr2:27934421-27973653 Sample_02_0995 Blood MOLM-13_empty vector 360 17 866 42 0 116 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_111201052 chr2:27934454-27960944 Sample_02_1112 T lymphocyte THP-6 T-ALL 1052 5 576 28 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_099300412 chr2:27937153-27961498 Sample_02_0993 Blood MOLM-13_empty 412 15 521 25 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_109800562 chr2:27937239-27963295 Sample_02_1098 Blood THP1_DMSO_noPMA 562 7 574 27 0 97 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_130800303 chr2:27939830-27989115 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 303 8 1095 52 2 153 126 BRE,RBKS,BRE-AS1,MIR4263
SE_02_156900853 chr2:27940076-27961098 Sample_02_1569 Endothelial Endothelial cells 853 4 433 17 0 92 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_130900514 chr2:27940275-27990470 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 514 8 1115 53 2 153 126 BRE,RBKS,BRE-AS1,MIR4263
Genomic distribution of SEs associated with BRE-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of BRE-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)