SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: BRE Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_099400022 chr2:27771081-27850104 Sample_02_0994 Blood MOLM13_SIK3TQ 22 29 1784 112 11 192 633 MRPL33,RBKS,BRE-AS1,BRE
SE_02_025600127 chr2:27792092-27850222 Sample_02_0256 Peripheral blood MV411 127 9 1333 94 8 169 317 RBKS,BRE,LOC100302650,MRPL33
SE_02_099500079 chr2:27792506-27841581 Sample_02_0995 Blood MOLM-13_empty vector 79 32 1142 76 7 114 224 RBKS,MRPL33,BRE-AS1,BRE
SE_02_150000273 chr2:27837617-27874013 Sample_02_1500 Brain KELLY_untreat 273 15 788 67 3 148 267 RBKS,BRE,BRE-AS1
SE_02_126300776 chr2:27853858-27861388 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 776 2 155 11 0 45 37 RBKS,BRE,BRE-AS1
SE_02_126701394 chr2:27854448-27861114 Sample_02_1267 Bone Im-GCT-4072_G34W 1394 3 136 9 0 45 37 RBKS,BRE,BRE-AS1
SE_00_000300779 chr2:27874460-27922054 Sample_00_0003 Adrenal gland adrenal-gland_97d 779 7 1101 56 3 119 421 BRE,RBKS,LOC100302650
SE_02_042900361 chr2:27880879-27890522 Sample_02_0429 Kidney 12364284_VHL+ 361 6 236 8 1 21 162 RBKS,LOC100302650,BRE
SE_02_026800630 chr2:27880898-27890545 Sample_02_0268 Kidney A-498 630 4 235 8 1 22 167 RBKS,LOC100302650,BRE
SE_02_076201439 chr2:27880919-27892462 Sample_02_0762 Podocyte podocyte_CTL 1439 1 263 10 2 64 356 BRE-AS1,BRE,RBKS
SE_02_043000484 chr2:27880941-27890545 Sample_02_0430 Kidney 12364284 484 4 235 8 1 22 167 RBKS,LOC100302650,BRE
SE_02_001000813 chr2:27880996-27890679 Sample_02_0010 Kidney A-498_emptyvector 813 3 240 8 1 23 198 BRE,RBKS,LOC100302650
SE_03_001300052 chr2:27883331-27995661 Sample_03_0013 Lung A549 52 9 2541 131 5 303 575 BRE,RBKS,LOC100302650,MIR4263
SE_02_158200163 chr2:27883360-27892846 Sample_02_1582 Renal OS-RC-2 163 1 205 8 2 65 366 BRE-AS1,BRE,RBKS
SE_02_098901323 chr2:27883846-27892674 Sample_02_0989 Kidney kidney cortex_WT 1323 1 184 7 2 64 366 BRE-AS1,BRE,RBKS
SE_02_125900379 chr2:27883994-27891735 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 379 1 167 7 2 62 335 BRE-AS1,BRE,RBKS
SE_02_014400415 chr2:27884629-27895672 Sample_02_0144 Peripheral blood MV411_DMSO 415 1 245 10 2 74 421 BRE,RBKS,LOC100302650
SE_02_135100853 chr2:27884669-27892163 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 853 1 156 7 2 63 335 BRE-AS1,BRE,RBKS
SE_02_092800236 chr2:27884855-27900764 Sample_02_0928 Peripheral blood neutrophils_Ecoli 236 1 367 14 1 77 421 BRE-AS1,BRE,RBKS
SE_02_143100800 chr2:27886992-27893537 Sample_02_1431 Blood T cell 800 1 139 7 1 60 366 BRE-AS1,BRE,RBKS
SE_02_158100537 chr2:27887662-27892884 Sample_02_1581 Renal OS-LM1 537 1 112 5 1 58 366 BRE-AS1,BRE,RBKS
SE_02_087500617 chr2:27887663-27901901 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 617 1 344 15 1 82 421 BRE-AS1,BRE,RBKS
SE_02_149200427 chr2:27887770-27902276 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 427 1 349 15 1 82 421 BRE-AS1,BRE,RBKS
SE_02_080800859 chr2:27887799-27893864 Sample_02_0808 Ovary RMG1_ARID1A KO 859 1 141 7 1 60 366 BRE-AS1,BRE,RBKS
SE_02_046100465 chr2:27888001-27892064 Sample_02_0461 Blood MV-4-11-B cells 465 1 90 4 1 57 335 BRE-AS1,BRE,RBKS
SE_02_126000857 chr2:27888245-27891685 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 857 1 81 4 1 56 335 BRE-AS1,BRE,RBKS
SE_02_071301332 chr2:27888559-27893222 Sample_02_0713 Pancreas BxPC3_sgTP63 1332 1 103 6 1 58 366 BRE-AS1,BRE,RBKS
SE_00_000900518 chr2:27889454-27893701 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 518 1 97 6 1 59 352 BRE,RBKS,LOC100302650
SE_01_010800103 chr2:27893102-27921440 Sample_01_0108 Adrenal gland adrenal gland_37y 103 14 659 34 1 54 55 BRE,RBKS,BRE-AS1
SE_04_000700049 chr2:27910925-28011609 Sample_04_0007 Lung A549 FOXA2 shRNA2 49 22 2201 122 3 257 197 BRE,MIR4263,RBKS,BRE-AS1
SE_02_045600391 chr2:27911743-27967660 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 391 12 1243 72 1 131 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_098900666 chr2:27911883-27967755 Sample_02_0989 Kidney kidney cortex_WT 666 27 1243 72 1 131 28 BRE,RBKS,BRE-AS1,MIR4263
SE_03_001600083 chr2:27913307-27982342 Sample_03_0016 Lung A549_dexamethasone_6h 83 5 1537 89 2 161 28 BRE,MIR4263,LOC100302650,RBKS
SE_03_000800152 chr2:27913416-27995637 Sample_03_0008 Lung A549_dexamethasone_7h 152 6 1831 102 3 198 154 BRE,MIR4263,LOC100302650,RBKS
SE_03_001400107 chr2:27913449-27994715 Sample_03_0014 Lung A549_dexamethasone_2h 107 6 1811 101 3 198 154 BRE,MIR4263,LOC100302650,RBKS
SE_03_000400094 chr2:27913555-27995067 Sample_03_0004 Lung A549_dexamethasone_4h 94 7 1811 100 2 198 154 BRE,MIR4263,LOC100302650,RBKS
SE_02_149200179 chr2:27913612-27936498 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 179 1 508 36 0 29 28 BRE,RBKS,BRE-AS1
SE_02_033600066 chr2:27913685-27963294 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 66 5 1103 65 0 126 28 BRE,MIR4263,LOC100302650,RBKS
SE_03_000900122 chr2:27913721-27995121 Sample_03_0009 Lung A549_dexamethasone_3h 122 6 1811 100 2 198 154 BRE,MIR4263,LOC100302650,RBKS
SE_01_000600277 chr2:27913765-27994517 Sample_01_0006 Lung A549_ethanol_1h 277 10 1802 100 2 194 154 BRE,MIR4263,LOC100302650,RBKS
SE_02_003000226 chr2:27913849-27923264 Sample_02_0030 Kidney human kidney proximal tubule cells 226 3 197 16 0 16 0 BRE,LOC100302650,RBKS
SE_02_033200355 chr2:27913870-27972002 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 355 7 1289 74 0 141 28 BRE,MIR4263,LOC100302650,RBKS
SE_02_083300342 chr2:27913881-27994448 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 342 24 1792 99 2 194 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_034300478 chr2:27913923-27961733 Sample_02_0343 Bone marrow HSPC_A0 478 9 1045 63 0 124 28 BRE,MIR4263,LOC100302650,RBKS
SE_02_008400292 chr2:27913962-27933485 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 292 2 429 33 0 29 28 BRE,LOC100302650,RBKS
SE_02_058000301 chr2:27914009-27989721 Sample_02_0580 Blood HEL_sgSIK3e4 301 27 1706 95 2 185 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_046000423 chr2:27914112-27962366 Sample_02_0460 Blood ME-1_I-10-49_6h 423 18 1063 63 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_008200124 chr2:27914190-27933561 Sample_02_0082 Oral cavity KB_IL-1alpha 124 2 428 32 0 29 28 BRE,LOC100302650,RBKS
SE_02_057900361 chr2:27914253-27971698 Sample_02_0579 Blood HEL_sgNeg2 361 21 1278 73 0 133 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_008300199 chr2:27914430-27933445 Sample_02_0083 Oral cavity KB_untreat 199 3 414 32 0 29 28 BRE,LOC100302650,RBKS
SE_02_083500703 chr2:27914941-27994284 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 703 26 1763 96 2 194 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_158200075 chr2:27915533-28004851 Sample_02_1582 Renal OS-RC-2 75 23 1964 110 2 218 197 BRE,MIR4263,RBKS,BRE-AS1
SE_02_071000740 chr2:27916135-27933026 Sample_02_0710 Pancreas hN34_organoid 740 8 365 28 0 29 28 BRE,RBKS,BRE-AS1
SE_02_058900096 chr2:27916198-27980625 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 96 27 1443 82 1 155 28 BRE,RBKS,BRE-AS1,MIR4263
SE_04_000400032 chr2:27916403-27994204 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 32 18 1735 93 2 194 154 BRE,RBKS,BRE-AS1,MIR4263
SE_02_059000323 chr2:27916442-27933075 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 323 10 364 27 0 29 28 BRE,RBKS,BRE-AS1
SE_02_158100194 chr2:27916449-27962484 Sample_02_1581 Renal OS-LM1 194 11 1024 58 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_077000388 chr2:27916450-28004134 Sample_02_0770 Ovary OVCA429_shLuc 388 36 1939 108 2 210 197 BRE,MIR4263,RBKS,BRE-AS1
SE_04_000600372 chr2:27916568-27962526 Sample_04_0006 Lung A549 GFP control 372 14 1023 57 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_076200274 chr2:27916654-28005126 Sample_02_0762 Podocyte podocyte_CTL 274 20 1949 107 2 218 197 BRE,MIR4263,RBKS,BRE-AS1
SE_02_042800489 chr2:27916662-27989317 Sample_02_0428 Kidney 12364284_VHL- 489 15 1634 88 2 185 154 BRE,MIR4263,LOC100302650,RBKS
SE_02_087500279 chr2:27917990-27939390 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 279 1 494 34 0 29 28 BRE,RBKS,BRE-AS1
SE_02_094900434 chr2:27918128-27960654 Sample_02_0949 Umbilical artery HUAEC_WT 434 23 941 54 0 124 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_034200341 chr2:27918545-27962630 Sample_02_0342 Liver HSPCs_F0 341 13 985 56 0 126 28 BRE,MIR4263,LOC100302650,RBKS
SE_03_001500173 chr2:27918680-27995057 Sample_03_0015 Lung A549_dexamethasone_8h 173 8 1711 92 2 198 154 BRE,MIR4263,LOC100302650,RBKS
SE_02_014400110 chr2:27919864-27963141 Sample_02_0144 Peripheral blood MV411_DMSO 110 4 977 54 0 125 28 BRE,MIR4263,LOC100302650,RBKS
SE_02_082000285 chr2:27920178-27960917 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 285 7 907 50 0 121 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_082100195 chr2:27920215-27961581 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 195 8 920 51 0 121 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_130100208 chr2:27920239-27962854 Sample_02_1301 Blood PER-117 208 13 957 52 0 123 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_134100237 chr2:27921536-27967318 Sample_02_1341 Blood MV411 237 16 1029 58 0 116 28 BRE,RBKS,BRE-AS1,MIR4263
SE_02_031700071 chr2:27930259-28005432 Sample_02_0317 Neuroblastoma GICAN 71 6 1655 88 2 195 169 BRE,MIR4263,LOC100302650,RBKS
SE_02_030100128 chr2:27930520-28006037 Sample_02_0301 Neuroblastoma GIMEN 128 7 1656 89 2 197 169 BRE,MIR4263,LOC100302650,RBKS
SE_02_033500349 chr2:27933272-27962846 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 349 6 662 31 0 97 0 BRE,MIR4263,LOC100302650,RBKS
SE_02_099400409 chr2:27933683-27962099 Sample_02_0994 Blood MOLM13_SIK3TQ 409 12 623 31 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_139100343 chr2:27933965-27980974 Sample_02_1391 Peripheral blood FE-PD_ALK- 343 9 1055 53 1 126 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_057700738 chr2:27934343-27961467 Sample_02_0577 Blood MOLM13_empty 738 9 589 29 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_099500360 chr2:27934421-27973653 Sample_02_0995 Blood MOLM-13_empty vector 360 17 866 42 0 116 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_111201052 chr2:27934454-27960944 Sample_02_1112 T lymphocyte THP-6 T-ALL 1052 5 576 28 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_099300412 chr2:27937153-27961498 Sample_02_0993 Blood MOLM-13_empty 412 15 521 25 0 95 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_109800562 chr2:27937239-27963295 Sample_02_1098 Blood THP1_DMSO_noPMA 562 7 574 27 0 97 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_033400346 chr2:27939611-27963411 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 346 1 514 22 0 94 0 BRE,MIR4263,LOC100302650,RBKS
SE_02_130800303 chr2:27939830-27989115 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 303 8 1095 52 2 153 126 BRE,RBKS,BRE-AS1,MIR4263
SE_02_156900853 chr2:27940076-27961098 Sample_02_1569 Endothelial Endothelial cells 853 4 433 17 0 92 0 BRE,RBKS,BRE-AS1,MIR4263
SE_02_130900514 chr2:27940275-27990470 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 514 8 1115 53 2 153 126 BRE,RBKS,BRE-AS1,MIR4263
Genomic distribution of SEs associated with BRE
Genome Browser

The strength of the tissue affected by the gene

Expression of BRE

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)