SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000126581
Gene: BECN1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:42810134-42833350 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_011000699 chr17:42762455-42785129 Sample_02_0110 Ovaries IOE11 699 3 587 24 1 183 1423 WNK4,VPS25,RAMP2,CCDC56,LOC100190938,CNTD1,BECN1,PSME3,EZH1
SE_02_147100653 chr17:42762633-42788354 Sample_02_1471 Blood Outgrowth Endothelia BOEC 653 4 684 28 1 213 1783 WNK4,RAMP2,VPS25,CNTD1,BECN1,PSME3,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_132200361 chr17:42762661-42784549 Sample_02_1322 Connective Tissue HT1080_WT 361 3 565 21 1 183 1288 WNK4,RAMP2,VPS25,CNTD1,BECN1,PSME3,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_132100439 chr17:42762688-42784652 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 439 5 569 21 1 182 1311 WNK4,RAMP2,VPS25,CNTD1,BECN1,PSME3,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_122900440 chr17:42764242-42796483 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 440 12 878 42 1 233 2369 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3,AOC2,PLEKHH3,CNTNAP1,TUBG1,PSMC3IP
SE_02_006800223 chr17:42767849-42784495 Sample_02_0068 Skin A375_DMSO 223 3 432 13 1 156 1162 WNK4,VPS25,CCDC56,LOC100190938,CNTD1,BECN1,RAMP2,PSME3,EZH1
SE_02_031700489 chr17:42770919-42786291 Sample_02_0317 Neuroblastoma GICAN 489 1 401 15 1 167 1378 WNK4,VPS25,CCDC56,LOC100190938,CNTD1,BECN1,RAMP2,PSME3,EZH1
SE_04_000200937 chr17:42772209-42782743 Sample_04_0002 Blood cold shocked K562 937 1 272 9 1 130 851 WNK4,VPS25,CNTD1,BECN1,COA3,RAMP2,MIR6781,RAMP2-AS1,EZH1
SE_02_010700572 chr17:42772387-42785959 Sample_02_0107 Endometrium EEC16 572 2 355 12 1 167 1378 WNK4,VPS25,CCDC56,LOC100190938,CNTD1,BECN1,RAMP2,PSME3,EZH1
SE_02_113000253 chr17:42772477-42783386 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 253 1 284 9 1 138 922 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_026400854 chr17:42772500-42784954 Sample_02_0264 Skeletal muscle 7250-empty 854 2 326 12 1 158 1222 WNK4,VPS25,CCDC56,LOC100190938,CNTD1,BECN1,RAMP2,PSME3,EZH1
SE_04_000100911 chr17:42772516-42782673 Sample_04_0001 Blood heat shocked K562 911 1 258 9 1 130 830 WNK4,VPS25,CNTD1,BECN1,COA3,RAMP2,MIR6781,RAMP2-AS1,EZH1
SE_02_061000452 chr17:42772539-42784618 Sample_02_0610 Liposarcoma MLS 1765-92 452 2 315 9 1 158 1185 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_040600084 chr17:42772592-42783697 Sample_02_0406 Mammary gland ZR-75-30_parental 84 2 287 9 1 143 963 WNK4,VPS25,CCDC56,LOC100190938,CNTD1,BECN1,RAMP2,PSME3,EZH1
SE_02_027400785 chr17:42772630-42784825 Sample_02_0274 Endometriosis hTERT_KD 785 2 320 10 1 158 1209 WNK4,VPS25,CCDC56,LOC100190938,CNTD1,BECN1,RAMP2,PSME3,EZH1
SE_02_109900535 chr17:42772741-42782808 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 535 3 260 9 1 130 865 WNK4,VPS25,CNTD1,BECN1,COA3,RAMP2,MIR6781,RAMP2-AS1,EZH1
SE_02_098700541 chr17:42772754-42782730 Sample_02_0987 Blood K562_Control_1 541 2 257 9 1 130 850 WNK4,VPS25,CNTD1,BECN1,COA3,RAMP2,MIR6781,RAMP2-AS1,EZH1
SE_02_054501145 chr17:42772796-42782613 Sample_02_0545 Bone marrow K562 WT 1145 3 251 9 1 130 816 WNK4,VPS25,CNTD1,BECN1,COA3,RAMP2,MIR6781,RAMP2-AS1,EZH1
SE_02_113300910 chr17:42772945-42784460 Sample_02_1133 Liver Hepatic stellate cells 910 3 303 9 1 156 1154 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_135500938 chr17:42772957-42784507 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 938 2 304 9 1 156 1162 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_135601091 chr17:42773019-42784599 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 1091 2 305 9 1 158 1180 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_143601046 chr17:42773062-42785629 Sample_02_1436 Liver LSEC-Ctrl 1046 3 334 12 1 167 1368 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_063801121 chr17:42774461-42784771 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 1121 3 282 9 1 133 1048 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_098800667 chr17:42774583-42782641 Sample_02_0988 Blood K562_EPZ 667 2 214 8 1 105 642 WNK4,VPS25,CNTD1,BECN1,COA3,RAMP2,MIR6781,RAMP2-AS1,EZH1
SE_02_047701074 chr17:42777895-42783571 Sample_02_0477 Colon intestinal epithelial organoids_139a 1074 1 152 7 1 69 600 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_047800927 chr17:42778609-42783527 Sample_02_0478 Colon normal colon mucosa 927 1 133 6 0 65 593 WNK4,VPS25,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,EZH1,COA3
SE_02_132001345 chr17:42779684-42784389 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1345 2 124 4 0 66 619 WNK4,CNTD1,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,VPS25,EZH1,COA3
SE_02_082700711 chr17:42789324-42808762 Sample_02_0827 Stomach normal gastric 711 3 524 21 0 138 1418 WNK4,CNTD1,COA3,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,AOC3,AOC2,VPS25,EZH1
SE_02_105100307 chr17:42795206-42808295 Sample_02_1051 Esophagus Eso26 307 5 338 7 0 124 1089 WNK4,CNTD1,COA3,BECN1,PSME3,RAMP2,MIR6781,RAMP2-AS1,AOC3,AOC2,VPS25
SE_02_023600376 chr17:42796468-42807334 Sample_02_0236 Colon V206 376 3 272 5 0 96 756 CNTD1,CCDC56,WNK4,AOC2,AOC3,RAMP2,BECN1,LOC100190938,VPS25,PSME3
SE_02_024100317 chr17:42796503-42808058 Sample_02_0241 Colon V456 317 2 290 5 0 99 802 CNTD1,CCDC56,WNK4,AOC2,AOC3,RAMP2,BECN1,LOC100190938,VPS25,PSME3
SE_02_016800493 chr17:42801569-42807689 Sample_02_0168 Prostate LNCaP 493 1 137 3 0 60 277 CNTD1,AOC2,AOC3,RAMP2,BECN1,WNK4,CCDC56,LOC100190938,VPS25,PSME3
SE_02_047501020 chr17:42801850-42806491 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 1020 2 97 3 0 53 196 CNTD1,BECN1,PSME3,WNK4,RAMP2,MIR6781,RAMP2-AS1,AOC3,AOC2,VPS25,COA3
SE_02_046601165 chr17:42835210-42865210 Sample_02_0466 Adipose visceral adipocytes 1165 5 901 38 1 193 2584 AOC3,PSME3,AOC2,CNTD1,BECN1,MIR6781,AOC4P,G6PC,LINC00671,COA3
SE_02_046500172 chr17:42843606-42857344 Sample_02_0465 Adipose subcutaneous adipocytes 172 1 461 17 1 129 1840 AOC3,PSME3,AOC2,CNTD1,BECN1,MIR6781,AOC4P,G6PC,LINC00671,COA3
SE_02_006200094 chr17:42846407-42853572 Sample_02_0062 Adipose hMADS-3_brite 94 2 242 8 1 76 901 AOC2,AOC3,PSME3,CNTD1,BECN1,LOC90586,CCDC56,G6PC,LOC388387
Genomic distribution of SEs associated with BECN1
Genome Browser

The strength of the tissue affected by the gene

Expression of BECN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)