SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000175334
Gene: BANF1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:66002228-66004149 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_001900411 chr11:65890107-65962357 Sample_02_0019 Embryo Neural crest cells 411 10 1976 202 7 378 3343 TSGA10IP,FOSL1,CCDC85B,C11ORF68,SART1,DRAP1,CTSW,EFEMP2,CST6,EIF1AD,CFL1,BANF1,FIBP,MUS81
SE_02_103501417 chr11:65953440-65976651 Sample_02_1035 Mammary gland HCC70_Vehicle 1417 6 712 82 5 117 1446 SART1,TSGA10IP,DRAP1,C11ORF68,EIF1AD,CATSPER1,CST6,BANF1
SE_02_104800971 chr11:65956316-65984278 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 971 8 878 108 7 140 2022 SART1,TSGA10IP,DRAP1,C11ORF68,EIF1AD,CATSPER1,CST6,BANF1
SE_02_103900521 chr11:65956668-65978199 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 521 6 655 80 6 130 1643 SART1,TSGA10IP,DRAP1,C11ORF68,EIF1AD,CATSPER1,CST6,BANF1
SE_00_005500816 chr11:65956868-65989584 Sample_00_0055 Spleen spleen 34y 816 6 999 131 9 140 2022 SART1,TSGA10IP,DRAP1,C11ORF68,EIF1AD,CATSPER1,CST6,BANF1,C11orf68
SE_02_147301096 chr11:66004062-66022507 Sample_02_1473 Bone A-673 1096 7 529 68 1 73 1299 BANF1,CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3
SE_02_041900559 chr11:66004081-66023148 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 559 11 547 70 1 73 1395 CATSPER1,CST6,BANF1,SART1,EIF1AD,SF3B2,GAL3ST3,PACS1
SE_02_122800205 chr11:66004134-66023380 Sample_02_1228 Mammary gland MDA-MB-231_2 205 10 554 72 1 72 1412 BANF1,CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3
SE_02_049100024 chr11:66004139-66022621 Sample_02_0491 Pharyng Detroit 562-Control 24 3 537 69 1 72 1292 BANF1,CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3
SE_02_049200032 chr11:66004161-66022620 Sample_02_0492 Pharyng Detroit 562_LPS 32 4 537 69 1 72 1289 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_133500188 chr11:66004182-66023098 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 188 8 545 70 1 72 1370 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_003800849 chr11:66005461-66011108 Sample_02_0038 Embryo DE 849 1 160 25 0 13 0 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_084600329 chr11:66005571-66022277 Sample_02_0846 Mammary gland MDA-MB-231_untreat 329 5 477 59 1 59 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_031700757 chr11:66006035-66023369 Sample_02_0317 Neuroblastoma GICAN 757 1 500 63 1 54 1377 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1,PACS1
SE_02_075501135 chr11:66006043-66018762 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1135 2 357 53 1 39 706 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_004300485 chr11:66006138-66011100 Sample_02_0043 Embryo endodermal CyT49_ES_D2 485 1 141 24 0 8 0 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_149000069 chr11:66006254-66021930 Sample_02_1490 Lung H2087 69 7 450 58 1 53 1234 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_105801289 chr11:66006264-66021730 Sample_02_1058 Bone A673_SA2 Rescue 1289 10 439 57 1 53 1197 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_133700105 chr11:66006319-66022885 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 105 7 478 59 1 54 1304 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_042800943 chr11:66006356-66021974 Sample_02_0428 Kidney 12364284_VHL- 943 5 446 57 1 53 1244 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1,PACS1
SE_02_114500905 chr11:66006363-66023243 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 905 13 481 60 1 54 1375 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_114600058 chr11:66006404-66023344 Sample_02_1146 Peripheral nerve STS26T PRC2 WT 58 10 483 61 1 54 1377 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_136201183 chr11:66006406-66022607 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1183 7 466 58 1 54 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_126900331 chr11:66006414-66022883 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 331 5 472 58 1 54 1304 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_087200333 chr11:66006429-66023480 Sample_02_0872 Colon HCT116_siCtrl-5FU 333 11 489 61 1 54 1377 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_136101210 chr11:66006468-66022578 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 1210 6 464 57 1 54 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_102500807 chr11:66006491-66023020 Sample_02_1025 Esophagus KYSE150 807 4 470 57 1 54 1324 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_132100403 chr11:66006494-66022915 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 403 8 469 57 1 54 1308 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1,DRAP1
SE_02_153800455 chr11:66006528-66022924 Sample_02_1538 Mammary gland MDA-MB-231 455 4 467 57 1 54 1308 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_133300235 chr11:66006805-66023140 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 235 5 457 58 1 54 1350 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_133400211 chr11:66006904-66023295 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 211 6 457 58 1 51 1377 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_081101238 chr11:66007033-66022542 Sample_02_0811 Thyroid BCPAP 1238 5 439 57 1 51 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_132200396 chr11:66007051-66022916 Sample_02_1322 Connective Tissue HT1080_WT 396 6 449 57 1 51 1308 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1,DRAP1
SE_02_132000526 chr11:66007169-66022856 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 526 7 443 56 1 51 1295 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1,DRAP1
SE_02_064000784 chr11:66007508-66023010 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 784 7 441 55 1 50 1323 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_000900475 chr11:66008228-66021073 Sample_02_0009 Kidney 786-O_wtVHL 475 5 365 49 1 40 1039 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1,PACS1
SE_02_072600289 chr11:66008377-66021537 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 289 6 374 47 1 46 1156 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_147000588 chr11:66008412-66021848 Sample_02_1470 Umbilical Vein H441 588 4 386 49 1 46 1223 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_135100618 chr11:66008455-66021804 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 618 3 383 48 1 46 1217 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_103700195 chr11:66008459-66022572 Sample_02_1037 Pharynx FaDu Control 195 6 415 51 1 47 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_135300715 chr11:66008482-66022487 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 715 4 406 50 1 47 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_077101171 chr11:66008536-66022988 Sample_02_0771 Ovary OVCA429_shGRHL2 1171 9 419 51 1 47 1319 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_103800373 chr11:66008545-66021796 Sample_02_1038 Pharynx FaDu LPS 373 4 381 48 1 46 1215 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_126801094 chr11:66008548-66021767 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1094 3 380 48 1 46 1207 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_094600843 chr11:66008548-66022514 Sample_02_0946 Tongue HN12 843 4 406 51 1 47 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_071900391 chr11:66008563-66022016 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 391 6 392 49 1 46 1252 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_113701297 chr11:66008567-66022631 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1297 3 414 51 1 47 1257 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_086701410 chr11:66008772-66022987 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1410 8 408 49 1 47 1318 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_099100570 chr11:66009059-66023383 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 570 5 408 49 1 47 1377 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_087300354 chr11:66009494-66021042 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 354 5 324 39 1 40 1029 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_102900736 chr11:66009954-66019183 Sample_02_1029 Colon HCT116 736 1 255 36 1 34 780 CATSPER1,CST6,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_116900569 chr11:66011451-66022806 Sample_02_1169 Biliary H69_TGF beta_16h_2 569 1 333 32 1 46 1264 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_116600541 chr11:66011452-66022546 Sample_02_1166 Biliary H69_TGF beta_16h_1 541 1 324 32 1 46 1237 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_114800471 chr11:66011571-66022776 Sample_02_1148 Kidney WT 9-12_control_vehicle 471 2 333 32 1 46 1242 CATSPER1,CST6,PACS1,SART1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_006900564 chr11:66012672-66022727 Sample_02_0069 Brain SF268 564 3 312 29 1 35 989 CATSPER1,CST6,SF3B2,EIF1AD,GAL3ST3,BANF1,PACS1
SE_02_114900491 chr11:66013027-66021911 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 491 2 276 26 1 23 858 CATSPER1,CST6,PACS1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_087400479 chr11:66013090-66022170 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 479 8 283 26 1 24 871 CATSPER1,CST6,PACS1,EIF1AD,SF3B2,GAL3ST3,BANF1
SE_02_093900342 chr11:66013705-66022087 Sample_02_0939 Mammary gland MDA-MB-231_control 342 3 259 26 1 24 748 CATSPER1,PACS1,EIF1AD,CST6,SF3B2,GAL3ST3,BANF1
SE_02_153700496 chr11:66013836-66022530 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 496 4 270 25 1 24 748 CATSPER1,PACS1,EIF1AD,CST6,SF3B2,GAL3ST3,BANF1
SE_02_083101041 chr11:66013867-66022037 Sample_02_0831 Umblical vein HUVECs_TNF0min 1041 4 254 23 1 24 743 CATSPER1,PACS1,EIF1AD,CST6,SF3B2,GAL3ST3,BANF1,C11orf68,FIBP,SART1,CFL1,DRAP1
SE_02_153600333 chr11:66013953-66022581 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 333 3 271 25 1 24 748 CATSPER1,PACS1,EIF1AD,CST6,SF3B2,GAL3ST3,BANF1
SE_02_087000135 chr11:66014192-66021728 Sample_02_0870 Colon HCT116_GLIS2.1-DMSO 135 5 227 21 1 23 688 CATSPER1,PACS1,EIF1AD,CST6,SF3B2,GAL3ST3,BANF1
SE_02_043700606 chr11:66015091-66023094 Sample_02_0437 Bone 143B 606 4 246 23 1 24 832 CATSPER1,PACS1,EIF1AD,CST6,SF3B2,GAL3ST3,BANF1
SE_02_085701292 chr11:66047798-66053197 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1292 1 106 14 0 48 365 GAL3ST3,SF3B2,PACS1,EIF1AD,CATSPER1,CST6,BANF1
SE_02_122900935 chr11:66050206-66087293 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 935 21 878 77 1 219 1820 PACS1,SF3B2,EIF1AD,CATSPER1,CST6,GAL3ST3,BANF1
SE_02_101701507 chr11:66050667-66086970 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1507 6 857 74 1 217 1820 PACS1,SF3B2,EIF1AD,CATSPER1,CST6,GAL3ST3,BANF1
SE_02_076201893 chr11:66050669-66086804 Sample_02_0762 Podocyte podocyte_CTL 1893 9 852 74 1 217 1820 PACS1,SF3B2,EIF1AD,CATSPER1,CST6,GAL3ST3,BANF1
Genomic distribution of SEs associated with BANF1
Genome Browser

The strength of the tissue affected by the gene

Expression of BANF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)