SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000030110
Gene: BAK1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:33572547-33580293 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_047600669 chr6:33524157-33548218 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 669 13 833 156 7 22 0 GGNBP1,BAK1,LINC00336
SE_02_075200964 chr6:33543902-33552768 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 964 5 301 97 1 0 0 GGNBP1,BAK1,LINC00336
SE_02_075500859 chr6:33545096-33553350 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 859 2 294 98 1 0 0 GGNBP1,BAK1,LINC00336
SE_02_004300747 chr6:33546540-33552281 Sample_02_0043 Embryo endodermal CyT49_ES_D2 747 3 215 77 1 0 0 BAK1,GGNBP1,C6ORF227
SE_02_003801828 chr6:33546715-33552288 Sample_02_0038 Embryo DE 1828 2 207 76 1 0 0 BAK1,GGNBP1,C6ORF227
SE_02_032300187 chr6:33583171-33595990 Sample_02_0323 Colon RKO 187 1 354 50 4 33 1127 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_018400149 chr6:33585001-33633785 Sample_02_0184 Skin SKMEL30 149 7 1411 259 25 118 1025 C6ORF227,GGNBP1,ITPR3,BAK1
SE_02_004700778 chr6:33585062-33594407 Sample_02_0047 Pancreatic endoderm IIDP/donor790 778 1 255 35 3 32 820 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_006800216 chr6:33585162-33619658 Sample_02_0068 Skin A375_DMSO 216 10 1039 200 15 50 812 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_132100312 chr6:33585200-33623290 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 312 13 1137 217 20 94 1003 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_132000247 chr6:33585229-33633167 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 247 9 1398 258 24 118 996 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_018300288 chr6:33585243-33623036 Sample_02_0183 Skin SKMEL2 288 6 1129 216 18 93 993 C6ORF227,GGNBP1,ITPR3,BAK1
SE_02_132200664 chr6:33585287-33614604 Sample_02_1322 Connective Tissue HT1080_WT 664 7 911 175 14 50 781 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_044800470 chr6:33585312-33633759 Sample_02_0448 Bone MNNG 470 11 1404 259 25 118 978 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_113700323 chr6:33585319-33633729 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 323 12 1404 259 25 118 975 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_076300622 chr6:33585351-33634148 Sample_02_0763 Podocyte podocyte_DEX 622 11 1409 261 25 122 971 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_126701174 chr6:33585367-33622410 Sample_02_1267 Bone Im-GCT-4072_G34W 1174 7 1109 214 18 92 964 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_113900272 chr6:33585404-33634368 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 272 12 1415 262 26 121 955 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_158400337 chr6:33585481-33633775 Sample_02_1584 Brain U87 GBM_Mock 337 8 1402 259 25 117 936 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_086700220 chr6:33585584-33634246 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 220 21 1410 261 25 121 907 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_113800278 chr6:33585597-33634262 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 278 12 1410 261 25 121 903 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_114300091 chr6:33585715-33613544 Sample_02_1143 Peripheral nerve MPNST724_PRC2 WT 91 6 870 169 13 44 686 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_127901154 chr6:33585955-33634754 Sample_02_1279 Bone Mesenchymal stem cells 1154 13 1400 260 26 118 828 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_103000415 chr6:33586129-33593759 Sample_02_1030 Colon DKO 415 1 213 29 2 28 590 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_087300395 chr6:33586689-33601640 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 395 5 458 90 5 31 485 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_003200611 chr6:33587677-33594104 Sample_02_0032 Pancreas pancreatic-islets-M 611 1 178 26 2 26 330 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_099100354 chr6:33588467-33633825 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 354 9 1313 247 24 112 479 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_099000617 chr6:33588567-33614834 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 617 6 816 163 13 44 278 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_027000377 chr6:33588624-33614266 Sample_02_0270 Kidney PCS-400 377 6 801 159 13 44 278 C6ORF227,GGNBP1,BAK1,ITPR3
SE_02_045100573 chr6:33588802-33634747 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 573 9 1313 248 25 116 454 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_026900182 chr6:33588826-33614911 Sample_02_0269 Kidney HK-2 182 5 811 165 13 44 244 C6ORF227,GGNBP1,BAK1,ITPR3
SE_01_008700384 chr6:33588905-33634803 Sample_01_0087 Thyroid gland thyroid-gland 384 6 1307 246 25 115 425 C6ORF227,GGNBP1,ITPR3,BAK1
SE_02_011200322 chr6:33588932-33623471 Sample_02_0112 Connective tissue HT1080_untreated 322 7 1027 201 19 87 423 C6ORF227,GGNBP1,ITPR3,BAK1
SE_02_153700237 chr6:33588933-33620821 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 237 8 956 192 16 56 222 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_126800102 chr6:33588981-33634257 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 102 8 1300 245 24 115 415 LINC00336,GGNBP1,ITPR3,BAK1
SE_02_076900482 chr6:33589143-33628298 Sample_02_0769 Ovary HEYA8 482 24 1138 220 21 102 382 LINC00336,ITPR3,GGNBP1,BAK1
SE_02_108500225 chr6:33589215-33623540 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 225 9 1023 201 19 81 370 LINC00336,ITPR3,GGNBP1,BAK1
SE_02_153600686 chr6:33589277-33614375 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 686 7 785 157 13 37 169 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_131900309 chr6:33589385-33623667 Sample_02_1319 Connective Tissue HT1080_DDIT3 309 13 1024 200 19 81 370 LINC00336,ITPR3,GGNBP1,BAK1
SE_02_052100184 chr6:33589443-33634210 Sample_02_0521 Colon SW480 184 9 1290 243 24 109 370 LINC00336,ITPR3,GGNBP1,BAK1
SE_02_010800305 chr6:33589457-33633965 Sample_02_0108 Fallopian tube FT246 305 9 1287 242 24 105 370 C6ORF227,ITPR3,GGNBP1,BAK1
SE_02_093900233 chr6:33589664-33622729 Sample_02_0939 Mammary gland MDA-MB-231_control 233 6 991 197 17 73 370 LINC00336,ITPR3,GGNBP1,BAK1
SE_01_010500433 chr6:33589890-33633640 Sample_01_0105 Thyroid gland thyroid gland_54y 433 9 1268 240 24 98 370 LINC00336,ITPR3,GGNBP1,BAK1,UQCC2,LEMD2
SE_02_114900510 chr6:33589902-33615192 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 510 5 791 160 13 30 169 LINC00336,GGNBP1,BAK1,ITPR3
SE_02_103600147 chr6:33590159-33688297 Sample_02_1036 Mammary gland HCC70_XY018 147 43 2788 490 60 441 4639 LINC00336,ITPR3,GGNBP1,BAK1,UQCC2,MIR3934
SE_02_104800069 chr6:33603968-33700666 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 69 30 2746 457 71 509 6237 MIR3934,ITPR3,UQCC2,GGNBP1,BAK1,IP6K3,LINC00336
SE_02_032300069 chr6:33604287-33629082 Sample_02_0323 Colon RKO 69 1 703 120 16 79 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_135200185 chr6:33604503-33623317 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 185 6 549 96 14 59 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_135400108 chr6:33604713-33633676 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 108 10 810 138 19 83 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_136500596 chr6:33605003-33634608 Sample_02_1365 Pancreas AsPC1-untreated 596 15 812 139 20 87 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_024100579 chr6:33605158-33634410 Sample_02_0241 Colon V456 579 7 803 138 20 87 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_023700764 chr6:33605185-33639285 Sample_02_0237 Colon V389 764 13 919 158 22 90 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_135300324 chr6:33605330-33623097 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 324 5 510 92 12 59 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_126000349 chr6:33605348-33633800 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 349 7 785 135 19 83 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_041000186 chr6:33606356-33633600 Sample_02_0410 Brain BT16_NoDox 186 8 745 126 18 83 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_040700155 chr6:33606360-33635197 Sample_02_0407 Brain BT16 155 7 771 132 19 87 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_095100476 chr6:33607274-33624519 Sample_02_0951 HMSCs hMSCs 476 8 476 74 10 61 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064000646 chr6:33607302-33633740 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 646 7 715 114 15 83 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_011300477 chr6:33607781-33623457 Sample_02_0113 Connective tissue HT1080_DOX5d 477 3 433 70 9 59 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_058600661 chr6:33608090-33634234 Sample_02_0586 Chordal patient-derived chordoma MGH_4 661 7 695 114 14 87 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_138100348 chr6:33608104-33701607 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 348 24 2628 430 66 513 6289 MIR3934,ITPR3,UQCC2,GGNBP1,BAK1,IP6K3,LINC00336
SE_02_018500356 chr6:33608132-33633756 Sample_02_0185 Skin UACC257 356 3 685 112 14 83 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_127801154 chr6:33608133-33634469 Sample_02_1278 Chordoma UCH1_DMSO_48h 1154 8 701 115 15 87 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_142700782 chr6:33608298-33634427 Sample_02_1427 Shoulder fibroblast_343 782 13 695 115 15 87 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_126100322 chr6:33608633-33633784 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 322 6 669 110 14 83 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064300798 chr6:33608710-33633628 Sample_02_0643 Mammary gland MDA-MB-436 798 6 664 110 14 83 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_142600767 chr6:33608982-33640807 Sample_02_1426 Shoulder fibroblast_341 767 10 829 134 17 101 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_063800564 chr6:33609097-33635043 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 564 11 669 110 15 87 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_083100890 chr6:33609122-33635744 Sample_02_0831 Umblical vein HUVECs_TNF0min 890 8 680 111 15 88 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_151400094 chr6:33609226-33639570 Sample_02_1514 Lung Differentiated AT1-like cells 94 9 782 130 17 90 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_062000765 chr6:33609303-33624797 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 765 7 404 65 9 62 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_00_004300456 chr6:33609332-33639599 Sample_00_0043 Stomach stomach_96d 456 7 782 130 17 90 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_00_004200413 chr6:33609463-33638541 Sample_00_0042 Stomach stomach_30y 413 8 755 123 16 90 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_00_002200865 chr6:33609539-33635259 Sample_00_0022 Lung lung_30y 865 6 659 110 15 88 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_045200885 chr6:33609558-33633479 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 885 7 631 104 14 83 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_004500035 chr6:33609605-33639216 Sample_02_0045 Embryo endodermal CyT49_ES_D7 35 9 765 127 17 90 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_00_005601025 chr6:33609707-33638965 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1025 14 762 127 17 90 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_01_010901058 chr6:33609880-33634327 Sample_01_0109 Colon transverse colon_54y 1058 6 635 106 14 87 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_023600363 chr6:33609924-33634753 Sample_02_0236 Colon V206 363 10 640 107 15 87 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_048000809 chr6:33609953-33653608 Sample_02_0480 Gingival epithelial HGEP 809 14 1119 195 26 103 299 ITPR3,GGNBP1,BAK1,LINC00336,MIR3934
SE_02_121800616 chr6:33610031-33639139 Sample_02_1218 Bone marrow Daudi 616 12 749 127 17 90 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_049300097 chr6:33610044-33639260 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 97 9 749 127 17 90 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_052400321 chr6:33610527-33638260 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 321 8 711 121 16 85 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_125500508 chr6:33610578-33634514 Sample_02_1255 Bladder Bladder tumor Luminal2 508 5 619 106 15 82 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_136600783 chr6:33611422-33634241 Sample_02_1366 Pancreas BxPC3-untreated 783 6 588 103 13 77 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_088401093 chr6:33611425-33635025 Sample_02_0884 Colon LoVo 1093 12 600 106 14 77 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_047800721 chr6:33611529-33639049 Sample_02_0478 Colon normal colon mucosa 721 9 705 123 16 80 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_065200721 chr6:33613178-33641737 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 721 6 734 125 15 93 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064700798 chr6:33613263-33641718 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 798 6 730 123 15 93 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064801114 chr6:33613273-33641696 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1114 8 729 123 15 93 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064500879 chr6:33613349-33641659 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 879 6 726 122 15 93 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064900855 chr6:33613986-33641169 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 855 5 688 115 14 88 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_064400506 chr6:33614051-33633688 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 506 4 502 86 11 69 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_082600650 chr6:33614536-33639251 Sample_02_0826 Stomach gastric tumor 650 14 626 107 14 75 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_067401243 chr6:33618786-33623274 Sample_02_0674 Endometrium E1_FA 1243 1 124 23 5 44 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_067201266 chr6:33618787-33625510 Sample_02_0672 Endometrium endometrium cancer_DSG 1266 1 176 29 5 51 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_00_003500731 chr6:33618847-33625292 Sample_00_0035 Sigmoid colon sigmoid-colon 731 1 166 28 5 51 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_137100885 chr6:33619047-33641161 Sample_02_1371 Pancreas Patu899S-untreated 885 10 566 92 13 87 299 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_043900965 chr6:33619053-33633583 Sample_02_0439 Bone Hu09 965 4 383 64 10 68 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_122400709 chr6:33619108-33654745 Sample_02_1224 Bone marrow normal plasma cell 709 21 914 159 23 88 299 ITPR3,GGNBP1,BAK1,LINC00336,MIR3934
SE_02_066300500 chr6:33619249-33635675 Sample_02_0663 Thyroid TT 500 5 413 70 11 73 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_077900277 chr6:33619277-33704495 Sample_02_0779 Lymphoma U2932 277 47 2408 402 65 499 6290 MIR3934,ITPR3,UQCC2,GGNBP1,BAK1,IP6K3,LINC00336
SE_02_047701006 chr6:33619328-33639043 Sample_02_0477 Colon intestinal epithelial organoids_139a 1006 6 509 86 13 75 201 ITPR3,GGNBP1,BAK1,LINC00336
SE_00_002001364 chr6:33619510-33640245 Sample_00_0020 Large intestine large-intestine_108d 1364 4 529 89 13 75 201 ITPR3,GGNBP1,BAK1,C6ORF227
SE_02_151300485 chr6:33623308-33639642 Sample_02_1513 Lung Transitional AT2->1 cells 485 6 411 68 8 31 0 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_082700380 chr6:33624952-33642679 Sample_02_0827 Stomach normal gastric 380 5 456 76 8 40 98 ITPR3,GGNBP1,BAK1,LINC00336
SE_02_052500742 chr6:33627588-33636641 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 742 7 237 39 5 22 0 ITPR3,GGNBP1,BAK1,LINC00336
Genomic distribution of SEs associated with BAK1
Genome Browser

The strength of the tissue affected by the gene

Expression of BAK1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)