SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000171953
Gene: ATPAF2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:17977409-18039209 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_024000035 chr17:17877079-17992140 Sample_02_0240 Colon V429_2 35 23 2810 267 9 353 1075 LRRC48,TOM1L2,ATPAF2,SREBF1,C17ORF39
SE_02_002100046 chr17:17899721-17992343 Sample_02_0021 Colon V429 46 10 2259 232 7 260 681 LRRC48,TOM1L2,ATPAF2,C17ORF39
SE_02_103200067 chr17:17900193-18001511 Sample_02_1032 Head and neck SCC1 JQ1 67 30 2496 260 10 278 1030 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_103100049 chr17:17901923-18002163 Sample_02_1031 Head and neck SCC1 contol 49 38 2479 263 10 278 1030 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_010500211 chr17:17913328-17995719 Sample_02_0105 Skin neonatal_keratinocytes 211 12 2011 217 10 249 867 LRRC48,TOM1L2,ATPAF2,C17ORF39
SE_02_003300710 chr17:17918943-17995730 Sample_02_0033 Pancreas pancreatic-islets-F 710 13 1886 209 9 238 867 LRRC48,TOM1L2,ATPAF2,C17ORF39
SE_02_047500106 chr17:17919742-17992089 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 106 22 1773 195 6 227 606 LRRC48,TOM1L2,GID4,ATPAF2
SE_01_010700405 chr17:17935170-17991139 Sample_01_0107 Esophagus esophagus squamous epithelium 405 12 1391 146 5 160 606 LRRC48,TOM1L2,GID4,ATPAF2
SE_00_001100312 chr17:17935196-17990860 Sample_00_0011 Esophagus esophagus 312 13 1384 145 5 160 606 LRRC48,TOM1L2,ATPAF2,C17ORF39
SE_02_056300341 chr17:17935929-17992129 Sample_02_0563 Mammary gland MCF7L-P_0h 341 20 1397 148 5 160 606 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_071300691 chr17:17936041-17991142 Sample_02_0713 Pancreas BxPC3_sgTP63 691 12 1372 145 5 160 606 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_085300332 chr17:17939945-17994424 Sample_02_0853 Mammary gland MCF7L-TamR 332 15 1355 149 7 157 750 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_077700163 chr17:17940227-17991092 Sample_02_0777 Mammary gland MCF7_TAMR 163 11 1267 135 5 149 606 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_114500631 chr17:17943389-17993986 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 631 16 1264 139 7 138 697 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_104700866 chr17:17944109-17999415 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 866 22 1389 154 8 144 955 LRRC48,TOM1L2,GID4,ATPAF2
SE_02_004700541 chr17:17958011-17995990 Sample_02_0047 Pancreatic endoderm IIDP/donor790 541 9 912 97 8 101 867 LRRC48,TOM1L2,ATPAF2,C17ORF39
SE_02_021600844 chr17:17984622-18012007 Sample_02_0216 Skin NHEK_scramble 844 6 715 67 5 48 751 LRRC48,TOM1L2,ATPAF2,C17ORF39
SE_02_103602801 chr17:18051476-18102560 Sample_02_1036 Mammary gland HCC70_XY018 2801 11 1336 110 6 101 1496 DRG2,GID4,MYO15A,ATPAF2
Genomic distribution of SEs associated with ATPAF2
Genome Browser

The strength of the tissue affected by the gene

Expression of ATPAF2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)