SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000197785
Gene: ATAD3A Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:1512162-1534685 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602493 chr1:1441049-1467749 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2493 10 1162 102 0 41 1704 VWA1,ATAD3C,ATAD3A,ANKRD65,MRPL20,ATAD3B,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_104800979 chr1:1445422-1482819 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 979 6 1645 140 0 76 2560 ATAD3B,ATAD3C,ATAD3A,VWA1,ANKRD65,MRPL20,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_088601569 chr1:1461513-1490779 Sample_02_0886 Skin foreskin_ p63KLF4 1569 8 1427 118 1 72 2300 ATAD3B,ATAD3C,ATAD3A,VWA1,ANKRD65,TMEM240,LOC102724312,TMEM88B
SE_02_010600171 chr1:1461542-1491089 Sample_02_0106 Skin NHEK_M 171 8 1442 118 1 72 2315 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869,C1ORF70
SE_02_021600694 chr1:1461980-1482631 Sample_02_0216 Skin NHEK_scramble 694 7 886 71 0 38 1346 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869
SE_02_012400505 chr1:1467672-1476298 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 505 1 332 27 0 22 619 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869
SE_02_021600489 chr1:1496456-1520634 Sample_02_0216 Skin NHEK_scramble 489 6 1065 93 0 31 918 ATAD3A,ATAD3C,C1ORF70,ATAD3B
SE_02_027500430 chr1:1504349-1541782 Sample_02_0275 Retina FW14 430 5 1756 152 1 176 3188 ATAD3A,C1ORF70,SSU72,ATAD3B
SE_02_035500442 chr1:1504453-1514608 Sample_02_0355 Colon HCT15 442 2 385 32 0 16 368 ATAD3A,C1ORF70,ATAD3B
SE_02_039601148 chr1:1510886-1514954 Sample_02_0396 Skin NHEK-D 1148 1 134 15 0 14 233 ATAD3A,C1ORF70,ATAD3B
SE_02_010600247 chr1:1516836-1543959 Sample_02_0106 Skin NHEK_M 247 8 1356 121 2 160 3019 ATAD3A,C1ORF70,SSU72,ATAD3B
SE_02_036700519 chr1:1532936-1574726 Sample_02_0367 Skeletal muscle NS129 519 8 1567 161 3 140 2218 ATAD3A,C1ORF70,SSU72,MIB2
SE_02_155900780 chr1:1535661-1551176 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 780 5 559 53 1 83 899 TMEM240,SSU72,ATAD3A,C1ORF233
SE_01_010701237 chr1:1542876-1580342 Sample_01_0107 Esophagus esophagus squamous epithelium 1237 8 1297 160 2 33 1090 SSU72,C1ORF233,MIB2,ATAD3A,TMEM240
SE_02_111101021 chr1:1543543-1580898 Sample_02_1111 Other HGrC1_SMAD2/3KO 1021 10 1299 159 2 33 973 SSU72,C1ORF233,MIB2,ATAD3A,TMEM240
SE_02_104301632 chr1:1547465-1572828 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1632 18 886 94 2 14 460 SSU72,C1ORF233,MIB2,ATAD3A,TMEM240
SE_02_141300760 chr1:1550433-1588940 Sample_02_1413 Muscle RH4_sgBRG1 760 9 1406 157 2 27 725 SSU72,C1ORF233,MIB2,ATAD3A,MMP23B,TMEM240,MMP23A
SE_02_035900152 chr1:1559336-1576129 Sample_02_0359 Colon Colo741 152 2 552 63 1 27 725 SSU72,ATAD3A,MIB2,C1ORF70
Genomic distribution of SEs associated with ATAD3A
Genome Browser

The strength of the tissue affected by the gene

Expression of ATAD3A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)