SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000137962
Gene: ARHGAP29 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:94148988-94275068 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_099000060 chr1:94239122-94286854 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 60 19 1154 44 1 159 47 ARHGAP29
SE_02_099100487 chr1:94239330-94270987 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 487 14 757 27 1 86 0 ARHGAP29
SE_02_028100163 chr1:94241857-94274906 Sample_02_0281 Bone U2OS 163 3 809 35 1 88 13 ARHGAP29
SE_02_113600503 chr1:94242969-94272975 Sample_02_1136 Bone U2OS-anaphase/telophase 503 8 738 30 1 81 0 ARHGAP29
SE_02_093900111 chr1:94243112-94287107 Sample_02_0939 Mammary gland MDA-MB-231_control 111 11 1087 44 2 152 47 ARHGAP29
SE_02_153400252 chr1:94243185-94301045 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 252 14 1506 62 2 185 47 ARHGAP29
SE_02_126000079 chr1:94243366-94272313 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 79 6 713 30 1 79 0 ARHGAP29
SE_02_126100186 chr1:94243639-94272302 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 186 14 708 30 1 79 0 ARHGAP29
SE_02_126200367 chr1:94244765-94271998 Sample_02_1262 Bone Im-GCT-3504_G34W 367 6 678 26 1 79 0 ARHGAP29
SE_02_126800289 chr1:94245562-94272340 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 289 9 678 28 1 79 0 ARHGAP29
SE_02_153700611 chr1:94245564-94286721 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 611 10 1035 41 1 152 47 ARHGAP29
SE_02_071201457 chr1:94245572-94271484 Sample_02_0712 Pancreas BxPC3_sgNEG 1457 8 654 25 1 79 0 ARHGAP29
SE_02_111300282 chr1:94245616-94301757 Sample_02_1113 Bone U2OS 282 13 1482 60 2 185 47 ARHGAP29
SE_02_102500100 chr1:94245716-94335672 Sample_02_1025 Esophagus KYSE150 100 34 2369 97 3 275 47 ARHGAP29
SE_02_137901283 chr1:94245796-94271932 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1283 8 662 26 1 79 0 ARHGAP29
SE_02_147100407 chr1:94245801-94336622 Sample_02_1471 Blood Outgrowth Endothelia BOEC 407 24 2390 97 3 277 47 ARHGAP29
SE_02_113400614 chr1:94246121-94272352 Sample_02_1134 Bone U2OS-interphase 614 9 663 27 1 79 0 ARHGAP29
SE_02_111500653 chr1:94246303-94274978 Sample_02_1115 Liver HepG2 653 6 736 31 1 83 19 ARHGAP29
SE_02_051100123 chr1:94246514-94255627 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 123 2 232 6 0 39 0 ARHGAP29
SE_02_139900178 chr1:94246523-94304496 Sample_02_1399 Bone U2OS_siMLL3.1 178 19 1531 60 2 185 47 ARHGAP29
SE_02_132500491 chr1:94246549-94277955 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 491 8 806 32 1 95 47 ARHGAP29
SE_02_021900086 chr1:94246603-94270674 Sample_02_0219 Mammary gland MDA-MB-231 86 3 616 21 1 75 0 ARHGAP29
SE_02_086701429 chr1:94246647-94305426 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1429 17 1555 60 2 190 47 ARHGAP29
SE_02_051000254 chr1:94246660-94255216 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 254 3 219 5 0 39 0 ARHGAP29
SE_02_057200307 chr1:94246678-94301718 Sample_02_0572 Brain LN229_1_mM_glucose 307 14 1455 57 2 181 47 ARHGAP29
SE_02_050900177 chr1:94246699-94255478 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 177 2 224 5 0 39 0 ARHGAP29
SE_02_051300149 chr1:94246891-94254768 Sample_02_0513 Prostate LNCaP95_shARfl_ETOH 149 5 200 4 0 38 0 ARHGAP29
SE_02_103501767 chr1:94247126-94257709 Sample_02_1035 Mammary gland HCC70_Vehicle 1767 3 263 6 1 47 0 ARHGAP29
SE_02_051200081 chr1:94247170-94254987 Sample_02_0512 Prostate LNCaP95_shARv7_DHT 81 4 196 4 0 38 0 ARHGAP29
SE_02_103601577 chr1:94247195-94257638 Sample_02_1036 Mammary gland HCC70_XY018 1577 5 261 6 1 47 0 ARHGAP29
SE_02_051400148 chr1:94247254-94255420 Sample_02_0514 Prostate LNCaP95_shARfl_DHT 148 4 203 4 0 38 0 ARHGAP29
SE_02_139800912 chr1:94247360-94272896 Sample_02_1398 Bone U2OS_siNC 912 11 642 23 1 74 0 ARHGAP29
SE_02_153600689 chr1:94264822-94286663 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 689 4 537 23 0 98 47 ARHGAP29
SE_02_027000593 chr1:94269793-94300332 Sample_02_0270 Kidney PCS-400 593 8 838 37 1 106 47 ARHGAP29
SE_01_011400154 chr1:94270558-94330778 Sample_01_0114 Colon HCT116_encode 154 21 1597 67 2 196 47 ARHGAP29
SE_02_091200709 chr1:94275208-94335928 Sample_02_0912 Heart left ventricle_DCM_LV1300 709 11 1616 64 2 189 2 ARHGAP29
SE_02_089600645 chr1:94276675-94335957 Sample_02_0896 Heart left ventricle_LV1294 645 16 1570 63 2 183 0 ARHGAP29
SE_02_090800458 chr1:94276934-94335932 Sample_02_0908 Heart left ventricle_DCM_LV1262 458 21 1565 63 2 183 0 ARHGAP29
SE_02_088801063 chr1:94277046-94335968 Sample_02_0888 Heart left ventricle_LV1160 1063 18 1566 63 2 183 0 ARHGAP29
SE_02_089200906 chr1:94277142-94335974 Sample_02_0892 Heart left ventricle_LV1215 906 17 1565 63 2 183 0 ARHGAP29
SE_02_088700503 chr1:94277300-94335941 Sample_02_0887 Heart left ventricle_LV1121 503 11 1562 63 2 180 0 ARHGAP29
SE_02_156900206 chr1:94279381-94330291 Sample_02_1569 Endothelial Endothelial cells 206 12 1362 54 2 164 0 ARHGAP29
SE_02_124200587 chr1:94280245-94301834 Sample_02_1242 Skin UISO_virus_negative 587 10 611 25 1 71 0 ARHGAP29
SE_02_059900050 chr1:94280348-94329243 Sample_02_0599 Colon HCT116_DMSO 50 17 1324 54 2 161 0 ARHGAP29
SE_02_060700053 chr1:94280871-94328982 Sample_02_0607 Colon HCT116 TP53-/-_Nutlin-3A 53 16 1311 53 2 161 0 ARHGAP29
SE_02_045800054 chr1:94280871-94330742 Sample_02_0458 Colon HCT116 DMSO 54 20 1350 56 2 161 0 ARHGAP29
SE_02_008000157 chr1:94284351-94328992 Sample_02_0080 Lung Calu-3 157 11 1223 50 2 138 0 ARHGAP29
SE_02_095000322 chr1:94284516-94336911 Sample_02_0950 Umbilical vein HUVEC_WT 322 36 1420 59 2 140 0 ARHGAP29,ABCD3
SE_02_049201182 chr1:94284698-94335249 Sample_02_0492 Pharyng Detroit 562_LPS 1182 11 1372 58 2 138 0 ARHGAP29
SE_01_005900386 chr1:94284699-94302423 Sample_01_0059 Lung PC-9 386 2 511 23 1 48 0 ARHGAP29
SE_02_065201085 chr1:94284753-94327430 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1085 14 1179 48 2 138 0 ARHGAP29
SE_02_049101073 chr1:94285030-94335171 Sample_02_0491 Pharyng Detroit 562-Control 1073 15 1362 58 2 127 0 ARHGAP29
SE_02_071300482 chr1:94285083-94335867 Sample_02_0713 Pancreas BxPC3_sgTP63 482 14 1377 59 2 127 0 ARHGAP29
SE_02_151500428 chr1:94285261-94328289 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 428 10 1182 49 2 125 0 ARHGAP29
SE_02_089000558 chr1:94286778-94335896 Sample_02_0890 Heart left ventricle_LV1200 558 14 1340 56 2 125 0 ARHGAP29
SE_02_090701224 chr1:94287362-94335907 Sample_02_0907 Heart left ventricle_DCM_LV1223 1224 19 1323 55 1 125 0 ARHGAP29
SE_02_092000398 chr1:94287705-94335910 Sample_02_0920 Heart left ventricle_DCM_LV1535 398 20 1312 55 1 125 0 ARHGAP29
Genomic distribution of SEs associated with ARHGAP29
Genome Browser

The strength of the tissue affected by the gene

Expression of ARHGAP29

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)