SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000234906
Gene: APOC2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:44946035-44949565 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138100081 chr19:44844081-44903295 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 81 33 1754 175 58 244 2703 PVRL2,TOMM40,APOE,BCAM,APOC1,APOC1P1,APOC4-APOC2,APOC2
SE_02_116800508 chr19:44844116-44903472 Sample_02_1168 Biliary H69_TGF Vehicle_2 508 18 1760 176 59 245 2750 PVRL2,TOMM40,APOE,BCAM,APOC1,APOC1P1,APOC4-APOC2,APOC2
SE_02_065900466 chr19:44846131-44900723 Sample_02_0659 Lung H23 466 20 1628 166 52 205 2118 PVRL2,TOMM40,APOE,BCAM,APOC1,APOC1P1,APOC4-APOC2,APOC2
SE_02_101700893 chr19:44867568-44912062 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 893 10 1371 126 57 227 3058 PVRL2,APOE,TOMM40,CLPTM1,APOC1P1,APOC1,APOC4-APOC2,APOC2
SE_02_104701193 chr19:44874010-44911259 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1193 16 1158 104 51 202 2878 PVRL2,APOE,TOMM40,CLPTM1,APOC1P1,APOC1,APOC4-APOC2,APOC2
SE_02_138300535 chr19:44879001-44903569 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 535 15 760 68 36 118 1753 PVRL2,TOMM40,APOE,APOC1P1,APOC1,APOC4-APOC2,APOC2
SE_02_037600437 chr19:44902212-44911277 Sample_02_0376 Skeletal muscle RMS237 437 2 276 19 12 56 1001 APOE,TOMM40,APOC1,CLPTM1,APOC4,APOC2,APOC1P1
SE_01_008200869 chr19:44902841-44916809 Sample_01_0082 Right lobe of liver right-lobe-of-liver 869 1 409 29 16 68 1200 APOE,TOMM40,APOC1,CLPTM1,APOC4,APOC2,APOC1P1
SE_04_000200503 chr19:44903117-44918338 Sample_04_0002 Blood cold shocked K562 503 1 441 34 18 69 1147 TOMM40,APOE,APOC1,CLPTM1,APOC1P1,APOC4-APOC2,APOC2
SE_04_000100262 chr19:44903696-44917990 Sample_04_0001 Blood heat shocked K562 262 1 415 32 16 63 987 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_046500564 chr19:44903856-44912987 Sample_02_0465 Adipose subcutaneous adipocytes 564 1 275 22 14 52 634 APOE,CLPTM1,APOC1P1,TOMM40,APOC1,APOC4-APOC2,APOC2
SE_02_075501018 chr19:44908436-44921067 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1018 4 356 30 15 39 689 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_119101014 chr19:44908448-44927594 Sample_02_1191 Brain GBM25 1014 3 573 46 17 46 888 APOC1,APOE,APOC1P1,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_081601034 chr19:44908567-44936829 Sample_02_0816 Ovary Clear cell ovarian cancer 1034 8 826 58 19 50 1086 APOC1,APOE,APOC1P1,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_075300153 chr19:44908578-44937149 Sample_02_0753 Embryo ES-derived progenitors_FG type 153 4 842 58 19 50 1085 APOC1,APOE,APOC1P1,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_075600814 chr19:44908642-44922008 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 814 4 388 35 15 37 635 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_111600539 chr19:44909035-44917991 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 539 1 245 19 8 18 424 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_118100889 chr19:44909036-44916023 Sample_02_1181 Brain GBM10 889 1 197 15 7 16 336 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_098800652 chr19:44909333-44922870 Sample_02_0988 Blood K562_EPZ 652 7 401 35 13 19 467 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_075700340 chr19:44909428-44936671 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 340 8 798 55 17 31 879 APOC1,APOC1P1,APOE,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_077502185 chr19:44909581-44938782 Sample_02_0775 Pancreas EndoC-BH1_SE 2185 7 854 58 17 31 859 APOC1,APOC1P1,APOE,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_028500244 chr19:44909584-44918447 Sample_02_0285 Liver HuH7_untreat 244 1 245 21 9 18 314 APOC1,CLPTM1,APOC4,APOC2,APOC1P1,TOMM40,APOE
SE_02_082000521 chr19:44909632-44916043 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 521 2 186 15 7 14 233 APOC1,APOE,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_028600486 chr19:44909651-44916654 Sample_02_0286 Liver HuH7_IL-1alpha_1h 486 1 204 15 7 16 314 APOC1,CLPTM1,APOC4,APOC2,APOC1P1,TOMM40,APOE
SE_02_136300491 chr19:44909938-44915882 Sample_02_1363 Blood Hudep2 491 2 174 15 7 14 224 APOC1,APOE,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_104603239 chr19:44910961-44933888 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3239 6 699 52 16 26 859 APOC1,APOC1P1,APOE,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_01_010600476 chr19:44911951-44936286 Sample_01_0106 Adrenal gland adrenal gland 54y 476 4 722 51 14 25 859 APOC1,APOC1P1,APOE,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_020700036 chr19:44912563-44938066 Sample_02_0207 Stomach FU97 36 8 754 52 13 25 859 APOC1,APOC1P1,CLPTM1,APOC4,APOC2,TOMM40,APOE
SE_02_003801686 chr19:44912582-44915776 Sample_02_0038 Embryo DE 1686 1 98 9 3 8 224 APOC1,CLPTM1,APOC4,APOC2,APOC1P1,TOMM40,APOE
SE_02_028600489 chr19:44921874-44928535 Sample_02_0286 Liver HuH7_IL-1alpha_1h 489 1 233 16 2 7 289 APOC1P1,APOC1,CLPTM1,APOC4,APOC2,TOMM40,APOE
SE_02_028500135 chr19:44921881-44928557 Sample_02_0285 Liver HuH7_untreat 135 1 234 16 2 7 289 APOC1P1,APOC1,CLPTM1,APOC4,APOC2,TOMM40,APOE
SE_02_004800748 chr19:44921883-44928191 Sample_02_0048 Embryo endodermal CyT49_HE 748 1 217 13 2 7 289 APOC1P1,APOC1,CLPTM1,APOC4,APOC2,TOMM40,APOE
SE_00_005100389 chr19:44950828-44991276 Sample_00_0051 Adrenal gland adrenal gland 30y 389 21 1324 137 8 139 1449 CLPTM1,APOE,APOC1P1,APOC1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_058400368 chr19:44950977-44961746 Sample_02_0584 Lung H1299 WT 368 8 329 54 2 52 264 CLPTM1,APOE,APOC1P1,APOC1,RELB,APOC4-APOC2,APOC2,PVRL2,CBLC,BCAM
SE_02_138200595 chr19:44951122-44993104 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 595 18 1382 138 8 159 1787 CLPTM1,APOE,APOC1P1,APOC1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_104800921 chr19:44959957-44996381 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 921 11 1233 99 6 118 1628 CLPTM1,APOC1P1,RELB,APOC1,APOC4-APOC2,APOC2,CLASRP
SE_02_104300425 chr19:44973951-45060980 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 425 25 2737 163 12 280 3848 CLPTM1,CLASRP,RELB,APOC1P1,PPP1R37,GEMIN7,APOC4-APOC2,ZNF296,APOC2
SE_02_104602043 chr19:44976960-45010264 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2043 8 1064 75 5 165 1730 CLPTM1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_078100232 chr19:44983970-45011773 Sample_02_0781 Lymphoma Pfeiffer_DMSO 232 1 897 62 2 160 1624 CLPTM1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_121800072 chr19:44986431-45019598 Sample_02_1218 Bone marrow Daudi 72 13 1046 67 2 165 1656 CLPTM1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_021300436 chr19:44987869-45020192 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 436 4 1017 62 1 149 1371 CLPTM1,RELB,APOC2,CLASRP,APOC4
SE_02_122300657 chr19:44987997-45019866 Sample_02_1223 Bone marrow KMS28BM 657 17 1000 59 1 149 1337 CLPTM1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_122500403 chr19:44988193-45019199 Sample_02_1225 Bone marrow RAJI 403 21 978 58 1 147 1295 CLPTM1,RELB,APOC4-APOC2,APOC2,CLASRP
SE_02_012200427 chr19:44988580-45018479 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 427 7 936 56 1 143 1243 CLPTM1,RELB,APOC2,CLASRP,APOC4
SE_01_005500523 chr19:44989026-45019682 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 523 7 960 58 1 143 1243 CLPTM1,RELB,APOC2,CLASRP,APOC4
SE_01_005300290 chr19:44989184-45019057 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 290 7 931 56 1 143 1243 CLPTM1,RELB,APOC2,CLASRP,APOC4
SE_01_009600463 chr19:44994600-45019566 Sample_01_0096 B-cell lymphoma DOHH2 463 7 737 44 1 83 525 RELB,CLPTM1,APOC2,CLASRP
SE_02_077500940 chr19:44995574-45051011 Sample_02_0775 Pancreas EndoC-BH1_SE 940 21 1657 87 3 143 1712 CLASRP,RELB,CLPTM1,PPP1R37,GEMIN7,APOC2,ZNF296,NKPD1,APOC4-APOC2
Genomic distribution of SEs associated with APOC2
Genome Browser

The strength of the tissue affected by the gene

Expression of APOC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)