Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | |
| Gene: | AGPAT4-IT1 | Gene type: | |
| Strand: | External links: |
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| Genomic region: | :- | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_138900158 | chr6:161030103-161138244 |
Sample_02_1389 | Peripheral blood | SUP-M2_ALK+ | 158 | 24 | 2862 | 162 | 18 | 177 | 2278 | AGPAT4,MAP3K4,AGPAT4-IT1 |
| SE_02_145900101 | chr6:161100314-161141712 |
Sample_02_1459 | Pancreas | THP1+PANC1_shCTCF | 101 | 8 | 1171 | 73 | 9 | 61 | 1584 | AGPAT4,MAP3K4,AGPAT4-IT1 |
| SE_02_149400478 | chr6:161108165-161118186 |
Sample_02_1494 | Other | monocyte-derived dendritic cells_0h | 478 | 8 | 277 | 13 | 2 | 31 | 346 | MAP3K4,AGPAT4-IT1 |
| SE_02_145800114 | chr6:161108193-161141549 |
Sample_02_1458 | Pancreas | THP1+PANC1_shNC | 114 | 11 | 970 | 56 | 7 | 43 | 1351 | AGPAT4,MAP3K4,AGPAT4-IT1 |
| SE_02_119601248 | chr6:161167588-161271765 |
Sample_02_1196 | Brain | GBM32 | 1248 | 22 | 2955 | 172 | 8 | 101 | 46 | AGPAT4,AGPAT4-IT1 |
| SE_02_145900165 | chr6:161184373-161245042 |
Sample_02_1459 | Pancreas | THP1+PANC1_shCTCF | 165 | 11 | 1644 | 95 | 3 | 83 | 46 | AGPAT4,AGPAT4-IT1 |
| SE_02_158401179 | chr6:161185370-161259171 |
Sample_02_1584 | Brain | U87 GBM_Mock | 1179 | 9 | 2009 | 112 | 6 | 97 | 46 | AGPAT4,AGPAT4-IT1 |
| SE_02_120400455 | chr6:161199204-161275260 |
Sample_02_1204 | Brain | NB2 | 455 | 18 | 2114 | 106 | 4 | 134 | 148 | AGPAT4,AGPAT4-IT1 |
| SE_02_058000207 | chr6:161199908-161275452 |
Sample_02_0580 | Blood | HEL_sgSIK3e4 | 207 | 28 | 2085 | 106 | 4 | 134 | 148 | AGPAT4,AGPAT4-IT1 |
| SE_02_066300309 | chr6:161200987-161275196 |
Sample_02_0663 | Thyroid | TT | 309 | 15 | 2054 | 103 | 4 | 122 | 148 | AGPAT4,AGPAT4-IT1 |
| SE_02_057600188 | chr6:161201249-161275298 |
Sample_02_0576 | Blood | HEL_sgLKB1e2 | 188 | 33 | 2044 | 101 | 4 | 117 | 148 | AGPAT4,AGPAT4-IT1 |
| SE_04_000100745 | chr6:161202958-161229816 |
Sample_04_0001 | Blood | heat shocked K562 | 745 | 5 | 697 | 30 | 0 | 42 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_04_000200633 | chr6:161203464-161230028 |
Sample_04_0002 | Blood | cold shocked K562 | 633 | 4 | 687 | 28 | 0 | 41 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_02_054501063 | chr6:161204371-161229934 |
Sample_02_0545 | Bone marrow | K562 WT | 1063 | 4 | 658 | 26 | 0 | 34 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_02_113000508 | chr6:161204387-161229867 |
Sample_02_1130 | Haematopoietic and lymphoid tissue bone marrow | K562_??Np63?? expressing | 508 | 5 | 657 | 26 | 0 | 34 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_02_057900220 | chr6:161204421-161274085 |
Sample_02_0579 | Blood | HEL_sgNeg2 | 220 | 29 | 1929 | 94 | 4 | 88 | 122 | AGPAT4,AGPAT4-IT1 |
| SE_02_054700203 | chr6:161204565-161227737 |
Sample_02_0547 | Bone marrow | K562_MYO1D_Hub_KO | 203 | 5 | 600 | 26 | 0 | 30 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_02_122900770 | chr6:161204658-161232337 |
Sample_02_1229 | Haematopoietic and lymphoid tissue bone marrow | K562_Control | 770 | 16 | 716 | 27 | 0 | 32 | 43 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_02_142300095 | chr6:161204766-161229705 |
Sample_02_1423 | Haematopoietic and lymphoid tissue bone marrow | K562_Triptolide_1h | 95 | 5 | 636 | 26 | 0 | 25 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
| SE_02_142400265 | chr6:161204939-161229719 |
Sample_02_1424 | Haematopoietic and lymphoid tissue bone marrow | K562_Triptolide_4h | 265 | 4 | 634 | 26 | 0 | 23 | 0 | AGPAT4,AGPAT4-IT1,MAP3K4 |
Genomic distribution of SEs associated with AGPAT4-IT1