Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000141385 |
| Gene: | AFG3L2 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr18:12328944-12377227 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_039600247 | chr18:12230336-12328307 |
Sample_02_0396 | Skin | NHEK-D | 247 | 24 | 3028 | 321 | 5 | 140 | 1398 | TUBB6,CIDEA,AFG3L2 |
| SE_02_031700137 | chr18:12271141-12328770 |
Sample_02_0317 | Neuroblastoma | GICAN | 137 | 5 | 1723 | 213 | 5 | 119 | 955 | TUBB6,CIDEA,AFG3L2 |
| SE_02_043800094 | chr18:12271243-12327898 |
Sample_02_0438 | Bone | HOS | 94 | 14 | 1702 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_146900229 | chr18:12271324-12328183 |
Sample_02_1469 | Umbilical Vein | HUVEC | 229 | 7 | 1707 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_058500513 | chr18:12271391-12327964 |
Sample_02_0585 | Umbilical vein | HUVEC 0hour | 513 | 12 | 1701 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_088600277 | chr18:12271418-12327861 |
Sample_02_0886 | Skin | foreskin_ p63KLF4 | 277 | 11 | 1699 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_156600507 | chr18:12271421-12327934 |
Sample_02_1566 | Dermal | Dermal fibroblast | 507 | 10 | 1700 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_127900567 | chr18:12271431-12327672 |
Sample_02_1279 | Bone | Mesenchymal stem cells | 567 | 13 | 1695 | 210 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_147100120 | chr18:12271478-12327974 |
Sample_02_1471 | Blood Outgrowth Endothelia | BOEC | 120 | 10 | 1697 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_143800374 | chr18:12271523-12327905 |
Sample_02_1438 | Liver | LSEC | 374 | 14 | 1695 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_143600385 | chr18:12271700-12327897 |
Sample_02_1436 | Liver | LSEC-Ctrl | 385 | 17 | 1691 | 211 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_063800151 | chr18:12271825-12328013 |
Sample_02_0638 | Fibroblast | HGPS fibroblast_LMNA_AG11498 | 151 | 16 | 1685 | 210 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_143700378 | chr18:12271848-12328581 |
Sample_02_1437 | Liver | LSEC-TNF | 378 | 19 | 1695 | 210 | 5 | 119 | 955 | CIDEA,TUBB6,AFG3L2 |
| SE_02_045200113 | chr18:12277866-12327996 |
Sample_02_0452 | Skin | hTERT immortalised human skin fibroblasts_Non-tumourigenic | 113 | 13 | 1496 | 189 | 3 | 114 | 733 | TUBB6,CIDEA,AFG3L2 |
| SE_02_045100143 | chr18:12278163-12327870 |
Sample_02_0451 | Skin | in vitro transformedskin fibroblasts_tumourigenic | 143 | 8 | 1488 | 188 | 3 | 114 | 733 | TUBB6,CIDEA,AFG3L2 |
| SE_02_122900970 | chr18:12288303-12327647 |
Sample_02_1229 | Haematopoietic and lymphoid tissue bone marrow | K562_Control | 970 | 13 | 1182 | 157 | 2 | 100 | 733 | TUBB6,CIDEA,AFG3L2 |
| SE_02_136300240 | chr18:12301708-12328744 |
Sample_02_1363 | Blood | Hudep2 | 240 | 6 | 760 | 101 | 0 | 95 | 733 | TUBB6,CIDEA,AFG3L2 |
| SE_02_137600472 | chr18:12306541-12328073 |
Sample_02_1376 | Pancreas | Pancreatic_tumor_associated_fibroblasts_B011C_untreated | 472 | 14 | 574 | 68 | 0 | 92 | 733 | TUBB6,AFG3L2 |
| SE_02_142800871 | chr18:12306583-12327936 |
Sample_02_1428 | Shoulder | fibroblast_316 | 871 | 5 | 571 | 68 | 0 | 92 | 733 | TUBB6,AFG3L2 |
| SE_02_046500647 | chr18:12306729-12328323 |
Sample_02_0465 | Adipose | subcutaneous adipocytes | 647 | 10 | 578 | 69 | 0 | 92 | 733 | TUBB6,AFG3L2 |
| SE_02_046600949 | chr18:12306738-12327968 |
Sample_02_0466 | Adipose | visceral adipocytes | 949 | 14 | 570 | 68 | 0 | 92 | 733 | TUBB6,AFG3L2 |
| SE_01_010701288 | chr18:12306760-12328126 |
Sample_01_0107 | Esophagus | esophagus squamous epithelium | 1288 | 5 | 574 | 68 | 0 | 92 | 733 | TUBB6,AFG3L2 |
| SE_02_137400492 | chr18:12307151-12327991 |
Sample_02_1374 | Pancreas | Pancreatic_tumor_associated_fibroblasts_B009B_untreated | 492 | 9 | 555 | 64 | 0 | 91 | 733 | TUBB6,AFG3L2 |
| SE_01_011500912 | chr18:12308201-12328762 |
Sample_01_0115 | Skeletal Muscle | myotube originated from skeletal muscle myoblast | 912 | 10 | 551 | 62 | 0 | 86 | 669 | TUBB6,AFG3L2 |
| SE_02_103500480 | chr18:12389056-12436813 |
Sample_02_1035 | Mammary gland | HCC70_Vehicle | 480 | 18 | 1476 | 148 | 4 | 33 | 780 | PRELID3A,AFG3L2 |
| SE_02_068700291 | chr18:12391937-12423976 |
Sample_02_0687 | Lung | NCI-H146_no infection | 291 | 6 | 943 | 98 | 4 | 18 | 342 | PRELID3A,AFG3L2 |
| SE_02_143201260 | chr18:12410185-12434360 |
Sample_02_1432 | Bone | A673 STAG2 WT | 1260 | 7 | 798 | 71 | 1 | 23 | 654 | PRELID3A,AFG3L2 |
| SE_02_143301079 | chr18:12414758-12434552 |
Sample_02_1433 | Bone | A673 STAG2 null | 1079 | 7 | 666 | 58 | 1 | 23 | 654 | PRELID3A,AFG3L2 |
Genomic distribution of SEs associated with AFG3L2