SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000248746
Gene: ACTN3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:66546395-66563334 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103602656 chr11:66469800-66502161 Sample_02_1036 Mammary gland HCC70_XY018 2656 8 822 80 8 159 2495 PELI3,LOC101928069,DPP3,MRPL11,ZDHHC24,BBS1,ACTN3,NPAS4
SE_02_104601918 chr11:66472401-66505160 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1918 9 826 84 8 146 2460 PELI3,LOC101928069,DPP3,MRPL11,ZDHHC24,BBS1,ACTN3
SE_02_104701697 chr11:66473032-66497673 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1697 11 631 65 7 140 2318 PELI3,LOC101928069,DPP3,MRPL11,ZDHHC24,BBS1,ACTN3
SE_02_104701780 chr11:66515514-66544056 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1780 12 803 66 1 73 1790 BBS1,ZDHHC24,PELI3,ACTN3,CCS,LOC101928069,CCDC87,DPP3,CTSF
SE_02_101500872 chr11:66567694-66585243 Sample_02_1015 Embryo H9_ Undifferentiated 872 4 495 53 2 12 270 CTSF,ACTN3,CCS,RBM14-RBM4,ZDHHC24,CCDC87
SE_02_055900334 chr11:66568555-66577762 Sample_02_0559 iPSCs FX52 iPSCs dC-T 334 4 269 43 1 9 35 CTSF,ACTN3,CCS,RBM14-RBM4,ZDHHC24,CCDC87
SE_02_116100113 chr11:66568890-66584477 Sample_02_1161 Embryo H1_shZNF587 113 7 432 45 1 0 0 CTSF,ACTN3,CCS,RBM14-RBM4,ZDHHC24,CCDC87,BBS1,RBM14,RBM4
SE_02_075500741 chr11:66568937-66577974 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 741 2 257 41 1 0 0 CTSF,ACTN3,CCS,RBM14-RBM4,ZDHHC24,CCDC87
SE_02_056000245 chr11:66569177-66576244 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 245 4 204 36 1 0 0 CTSF,ACTN3,CCS,RBM14-RBM4,ZDHHC24,CCDC87
SE_02_075200887 chr11:66569252-66577893 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 887 2 249 41 1 0 0 CTSF,ACTN3,CCS,RBM14-RBM4,ZDHHC24,CCDC87
SE_02_077501699 chr11:66571256-66608908 Sample_02_0775 Pancreas EndoC-BH1_SE 1699 12 966 72 1 105 1136 CCDC87,CCS,CTSF,ACTN3,RBM14-RBM4,ZDHHC24,RBM4,RBM14
SE_02_017201080 chr11:66594253-66651372 Sample_02_0172 Lung IMR-90_quiescent 1080 9 1377 66 4 375 2291 RBM14,CCS,RBM14-RBM4,RBM4,ACTN3,CCDC87,ZDHHC24,RBM4B,CTSF
SE_02_045900807 chr11:66594277-66619430 Sample_02_0459 Blood ME-1_DMSO_6h 807 4 560 29 0 116 618 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_01_007400567 chr11:66594642-66647036 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 567 5 1241 63 4 373 2291 RBM14,CCS,RBM14-RBM4,RBM4,ACTN3,CCDC87,ZDHHC24,RBM4B,CTSF
SE_01_010900693 chr11:66594821-66625220 Sample_01_0109 Colon transverse colon_54y 693 7 681 36 0 154 853 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_02_047401321 chr11:66594910-66621649 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1321 5 612 35 0 116 618 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_02_145201312 chr11:66594927-66619525 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1312 3 545 29 0 115 618 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_02_074700486 chr11:66594947-66671974 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 486 26 1825 92 4 446 2776 RBM4,RBM4B,CCS,RBM14,RBM14-RBM4,CTSF,ACTN3,SPTBN2,ZDHHC24,CCDC87
SE_02_093700522 chr11:66595169-66621655 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 522 8 601 34 0 115 618 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_02_122400925 chr11:66595172-66645804 Sample_02_1224 Bone marrow normal plasma cell 925 19 1202 62 4 351 2178 RBM4,RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,RBM4B,ZDHHC24,CCDC87
SE_02_104300819 chr11:66595293-66657579 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 819 20 1504 78 4 373 2291 RBM4,RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,RBM4B,ZDHHC24,CCDC87
SE_02_074600458 chr11:66595333-66638439 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 458 9 998 58 3 255 1587 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,RBM4B,ZDHHC24,CCDC87,RBM4
SE_02_158400465 chr11:66595418-66619439 Sample_02_1584 Brain U87 GBM_Mock 465 4 522 28 0 114 618 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_02_158300267 chr11:66595422-66665348 Sample_02_1583 Fetal lung IMR90_empty_GM 267 23 1648 85 4 383 2348 RBM4,RBM4B,CCS,RBM14,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87
SE_02_046500945 chr11:66595521-66625293 Sample_02_0465 Adipose subcutaneous adipocytes 945 8 661 35 0 156 872 RBM14,CCS,RBM14-RBM4,CTSF,ACTN3,ZDHHC24,CCDC87,RBM4
SE_02_104900383 chr11:66596031-66674881 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 383 60 1872 95 4 446 2776 RBM4,RBM4B,CCS,RBM14,RBM14-RBM4,CTSF,ACTN3,SPTBN2,ZDHHC24,CCDC87
Genomic distribution of SEs associated with ACTN3
Genome Browser

The strength of the tissue affected by the gene

Expression of ACTN3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)